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  5. Mp7g16700.1

Mp7g16700.1


Description : Pumilio homolog 1 OS=Arabidopsis thaliana (sp|q9zw07|pum1_arath : 607.0)


Gene families : OG0000536 (Archaeplastida) Phylogenetic Tree(s): OG0000536_tree ,
OG_05_0000342 (LandPlants) Phylogenetic Tree(s): OG_05_0000342_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g16700.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00251030 evm_27.TU.AmTr_v1... Pumilio homolog 2 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00025p00181800 evm_27.TU.AmTr_v1... Pumilio homolog 5 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT2G29190 APUM2, PUM2 pumilio 2 0.04 Archaeplastida
Cpa|evm.model.tig00001065.14 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01016507001 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01029553001 No alias Pumilio homolog 5 OS=Arabidopsis thaliana 0.05 Archaeplastida
LOC_Os01g62650.1 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10159883g0010 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_10434828g0010 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.06 Archaeplastida
MA_23070g0010 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_42218g0010 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.06 Archaeplastida
MA_6588g0010 No alias Pumilio homolog 3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_9025256g0010 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c8_2770V3.1 No alias pumilio 1 0.03 Archaeplastida
Pp3c8_3323V3.1 No alias pumilio 1 0.03 Archaeplastida
Smo1983 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc06g076340.3.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e029661_P001 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 1005 1037
IPR001313 Pumilio_RNA-bd_rpt 972 995
IPR001313 Pumilio_RNA-bd_rpt 788 817
IPR001313 Pumilio_RNA-bd_rpt 933 962
IPR001313 Pumilio_RNA-bd_rpt 898 928
IPR001313 Pumilio_RNA-bd_rpt 1054 1080
IPR001313 Pumilio_RNA-bd_rpt 825 856
IPR001313 Pumilio_RNA-bd_rpt 860 892
IPR012940 NABP 353 786
No external refs found!