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  5. Mp8g05460.1

Mp8g05460.1


Description : exoribonuclease (Dis3/RRP44)


Gene families : OG0001141 (Archaeplastida) Phylogenetic Tree(s): OG0001141_tree ,
OG_05_0003821 (LandPlants) Phylogenetic Tree(s): OG_05_0003821_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp8g05460.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00129280 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
AT2G17510 EMB2763 ribonuclease II family protein 0.03 Archaeplastida
Cpa|evm.model.tig00020554.88 No alias Exosome complex exonuclease RRP44 homolog A... 0.01 Archaeplastida
Cre03.g208100 No alias Inactive exonuclease DIS3L2 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre14.g613850 No alias Exosome complex exonuclease RRP44 homolog A... 0.02 Archaeplastida
GSVIVT01022300001 No alias RNA processing.RNA decay.exosome complex.associated... 0.04 Archaeplastida
Gb_36974 No alias DIS3-like exonuclease 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os03g03710.1 No alias exoribonuclease (Dis3/RRP44) 0.05 Archaeplastida
MA_10433522g0020 No alias Exosome complex exonuclease RRP44 homolog A... 0.02 Archaeplastida
MA_15005g0010 No alias Exosome complex exonuclease RRP44 homolog A... 0.04 Archaeplastida
MA_207701g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_89760g0020 No alias Inactive exonuclease DIS3L2 OS=Arabidopsis thaliana... 0.01 Archaeplastida
Pp3c16_17530V3.1 No alias ribonuclease II family protein 0.08 Archaeplastida
Pp3c2_21290V3.1 No alias Ribonuclease II/R family protein 0.02 Archaeplastida
Smo156135 No alias RNA processing.RNA decay.exosome complex.associated... 0.03 Archaeplastida
Smo445658 No alias Exosome complex exonuclease RRP44 homolog A... 0.02 Archaeplastida
Solyc02g082460.3.1 No alias exoribonuclease (Dis3/RRP44) 0.05 Archaeplastida
Zm00001e023860_P001 No alias DIS3-like exonuclease 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004540 ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR033770 RRP44_S1 845 917
IPR033771 Rrp44_CSD1 218 300
IPR002716 PIN_dom 54 177
No external refs found!