1. Home
  2. Species
  3. Marchantia polymorpha
  4. Sequence
  5. Mp8g06380.1

Mp8g06380.1


Description : scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex


Gene families : OG0003440 (Archaeplastida) Phylogenetic Tree(s): OG0003440_tree ,
OG_05_0004308 (LandPlants) Phylogenetic Tree(s): OG_05_0004308_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp8g06380.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00182220 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.02 Archaeplastida
AT2G39340 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.03 Archaeplastida
Cpa|evm.model.tig00020816.8 No alias RNA processing.messenger ribonucleoprotein particle... 0.01 Archaeplastida
Cpa|evm.model.tig00020930.32 No alias RNA processing.messenger ribonucleoprotein particle... 0.01 Archaeplastida
Cre06.g258100 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 Archaeplastida
GSVIVT01032627001 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 Archaeplastida
Gb_01094 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.02 Archaeplastida
LOC_Os01g61930.1 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.06 Archaeplastida
MA_39508g0010 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.02 Archaeplastida
Pp3c1_11990V3.1 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.04 Archaeplastida
Solyc05g054910.3.1 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.03 Archaeplastida
Zm00001e027254_P001 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.05 Archaeplastida
Zm00001e031846_P004 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
CC GO:0000347 THO complex IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
CC GO:0000445 THO complex part of transcription export complex IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006623 protein targeting to vacuole IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0072665 protein localization to vacuole IEP Neighborhood
BP GO:0072666 establishment of protein localization to vacuole IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR005062 SAC3/GANP/THP3 673 876
No external refs found!