AT4G12600


Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein


Gene families : OG0001139 (Archaeplastida) Phylogenetic Tree(s): OG0001139_tree ,
OG_05_0047875 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0042717 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G12600
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00103630 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.03 Archaeplastida
AMTR_s00043p00189790 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.11 Archaeplastida
Cpa|evm.model.tig00000600.11 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 Archaeplastida
Cre06.g249250 No alias RNA processing.RNA modification.rRNA/tRNA... 0.23 Archaeplastida
GSVIVT01008187001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.16 Archaeplastida
GSVIVT01015520001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 Archaeplastida
GSVIVT01016438001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 Archaeplastida
Gb_26398 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 Archaeplastida
LOC_Os03g13800.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.21 Archaeplastida
LOC_Os06g16290.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.24 Archaeplastida
LOC_Os10g03540.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.04 Archaeplastida
MA_10201g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 Archaeplastida
MA_141850g0010 No alias No annotation 0.03 Archaeplastida
MA_16906g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.18 Archaeplastida
MA_433779g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.16 Archaeplastida
MA_670271g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.06 Archaeplastida
MA_99460g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.13 Archaeplastida
Mp7g12360.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.05 Archaeplastida
Mp8g07360.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.05 Archaeplastida
Pp3c14_21860V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.03 Archaeplastida
Pp3c15_25080V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.04 Archaeplastida
Pp3c17_18010V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.02 Archaeplastida
Pp3c17_18050V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.1 Archaeplastida
Pp3c9_25980V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.07 Archaeplastida
Smo159569 No alias RNA processing.RNA modification.rRNA/tRNA... 0.05 Archaeplastida
Smo98161 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.09 Archaeplastida
Solyc09g011420.3.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.07 Archaeplastida
Solyc12g038980.2.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.23 Archaeplastida
Zm00001e001004_P001 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.09 Archaeplastida
Zm00001e015712_P001 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.02 Archaeplastida
Zm00001e023454_P001 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.05 Archaeplastida
Zm00001e038611_P002 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.23 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Interproscan
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006164 purine nucleotide biosynthetic process RCA Interproscan
BP GO:0006364 rRNA processing RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP Neighborhood
BP GO:0000741 karyogamy IEP Neighborhood
MF GO:0000976 transcription regulatory region sequence-specific DNA binding IEP Neighborhood
MF GO:0000987 proximal promoter sequence-specific DNA binding IEP Neighborhood
MF GO:0001072 transcription antitermination factor activity, RNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004407 histone deacetylase activity IEP Neighborhood
MF GO:0004641 phosphoribosylformylglycinamidine cyclo-ligase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Neighborhood
CC GO:0005743 mitochondrial inner membrane IEP Neighborhood
CC GO:0005758 mitochondrial intermembrane space IEP Neighborhood
CC GO:0005763 mitochondrial small ribosomal subunit IEP Neighborhood
CC GO:0005773 vacuole IEP Neighborhood
CC GO:0005774 vacuolar membrane IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0006094 gluconeogenesis IEP Neighborhood
BP GO:0006096 glycolytic process IEP Neighborhood
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006626 protein targeting to mitochondrion IEP Neighborhood
BP GO:0006754 ATP biosynthetic process IEP Neighborhood
BP GO:0006757 ATP generation from ADP IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0006970 response to osmotic stress IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
MF GO:0008308 voltage-gated anion channel activity IEP Neighborhood
MF GO:0008320 protein transmembrane transporter activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009108 coenzyme biosynthetic process IEP Neighborhood
BP GO:0009123 nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009132 nucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009141 nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009166 nucleotide catabolic process IEP Neighborhood
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009259 ribonucleotide metabolic process IEP Neighborhood
BP GO:0009260 ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009409 response to cold IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0009651 response to salt stress IEP Neighborhood
BP GO:0009735 response to cytokinin IEP Neighborhood
BP GO:0009845 seed germination IEP Neighborhood
BP GO:0009853 photorespiration IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
BP GO:0009955 adaxial/abaxial pattern specification IEP Neighborhood
BP GO:0010015 root morphogenesis IEP Neighborhood
BP GO:0010030 positive regulation of seed germination IEP Neighborhood
BP GO:0010311 lateral root formation IEP Neighborhood
MF GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
CC GO:0015935 small ribosomal subunit IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016273 arginine N-methyltransferase activity IEP Neighborhood
MF GO:0016274 protein-arginine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
MF GO:0016882 cyclo-ligase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018195 peptidyl-arginine modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018216 peptidyl-arginine methylation IEP Neighborhood
MF GO:0019213 deacetylase activity IEP Neighborhood
BP GO:0019319 hexose biosynthetic process IEP Neighborhood
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Neighborhood
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019693 ribose phosphate metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0022625 cytosolic large ribosomal subunit IEP Neighborhood
CC GO:0022626 cytosolic ribosome IEP Neighborhood
CC GO:0022627 cytosolic small ribosomal subunit IEP Neighborhood
MF GO:0022884 macromolecule transmembrane transporter activity IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
MF GO:0030515 snoRNA binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030686 90S preribosome IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
BP GO:0031554 regulation of DNA-templated transcription, termination IEP Neighborhood
BP GO:0031564 transcription antitermination IEP Neighborhood
CC GO:0031970 organelle envelope lumen IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0032870 cellular response to hormone stimulus IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
MF GO:0033558 protein deacetylase activity IEP Neighborhood
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0034969 histone arginine methylation IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042274 ribosomal small subunit biogenesis IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0042866 pyruvate biosynthetic process IEP Neighborhood
MF GO:0042887 amide transmembrane transporter activity IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043094 cellular metabolic compound salvage IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043244 regulation of protein complex disassembly IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043985 histone H4-R3 methylation IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0046031 ADP metabolic process IEP Neighborhood
BP GO:0046034 ATP metabolic process IEP Neighborhood
BP GO:0046364 monosaccharide biosynthetic process IEP Neighborhood
BP GO:0046390 ribose phosphate biosynthetic process IEP Neighborhood
BP GO:0046434 organophosphate catabolic process IEP Neighborhood
BP GO:0046939 nucleotide phosphorylation IEP Neighborhood
BP GO:0048284 organelle fusion IEP Neighborhood
BP GO:0048364 root development IEP Neighborhood
BP GO:0048569 post-embryonic animal organ development IEP Neighborhood
BP GO:0048580 regulation of post-embryonic development IEP Neighborhood
BP GO:0048831 regulation of shoot system development IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051239 regulation of multicellular organismal process IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0071215 cellular response to abscisic acid stimulus IEP Neighborhood
BP GO:0071229 cellular response to acid chemical IEP Neighborhood
BP GO:0071310 cellular response to organic substance IEP Neighborhood
BP GO:0071396 cellular response to lipid IEP Neighborhood
BP GO:0071495 cellular response to endogenous stimulus IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP Neighborhood
BP GO:0097306 cellular response to alcohol IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098799 outer mitochondrial membrane protein complex IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Neighborhood
BP GO:1901292 nucleoside phosphate catabolic process IEP Neighborhood
MF GO:1904680 peptide transmembrane transporter activity IEP Neighborhood
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
BP GO:2000026 regulation of multicellular organismal development IEP Neighborhood
BP GO:2000241 regulation of reproductive process IEP Neighborhood
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 23 111
No external refs found!