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  5. Mp8g10190.1

Mp8g10190.1


Description : pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp8g10190.1
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00186640 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.06 Archaeplastida
AMTR_s00039p00189000 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
AT2G02720 No alias Pectate lyase family protein 0.03 Archaeplastida
AT3G01270 No alias Pectate lyase family protein 0.02 Archaeplastida
AT3G07010 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT3G27400 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT4G13210 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT4G22080 RHS14 root hair specific 14 0.02 Archaeplastida
AT5G15110 No alias Pectate lyase family protein 0.02 Archaeplastida
GSVIVT01000592001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01020067001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01020068001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
GSVIVT01024239001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01028548001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01029048001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
Gb_19802 No alias pectate lyase 0.04 Archaeplastida
LOC_Os02g12300.1 No alias pectate lyase 0.05 Archaeplastida
LOC_Os06g38510.2 No alias pectate lyase 0.04 Archaeplastida
MA_101171g0010 No alias pectate lyase 0.04 Archaeplastida
MA_10353668g0010 No alias pectate lyase 0.02 Archaeplastida
MA_10426822g0020 No alias pectate lyase 0.04 Archaeplastida
MA_10430145g0030 No alias pectate lyase 0.03 Archaeplastida
MA_10437227g0010 No alias pectate lyase 0.02 Archaeplastida
MA_170547g0010 No alias pectate lyase 0.04 Archaeplastida
MA_203992g0010 No alias pectate lyase 0.05 Archaeplastida
MA_66914g0010 No alias pectate lyase 0.06 Archaeplastida
MA_91467g0010 No alias pectate lyase 0.02 Archaeplastida
MA_91467g0020 No alias pectate lyase 0.04 Archaeplastida
MA_97947g0010 No alias pectate lyase 0.04 Archaeplastida
Mp3g01000.1 No alias pectate lyase 0.04 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c13_1640V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
Pp3c17_16370V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c1_33130V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c1_35100V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c21_16990V3.1 No alias Pectate lyase family protein 0.04 Archaeplastida
Pp3c22_19760V3.1 No alias Pectate lyase family protein 0.03 Archaeplastida
Pp3c22_19780V3.1 No alias Pectate lyase family protein 0.03 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.08 Archaeplastida
Smo439243 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
Solyc01g010740.4.1 No alias pectate lyase 0.04 Archaeplastida
Solyc02g067450.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc02g087670.3.1 No alias pectate lyase 0.02 Archaeplastida
Solyc02g093580.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc03g058890.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc03g113150.3.1 No alias pectate lyase 0.02 Archaeplastida
Solyc05g007080.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc06g071020.3.1 No alias pectate lyase 0.03 Archaeplastida
Solyc06g071840.3.1 No alias Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc06g083580.4.1 No alias pectate lyase 0.03 Archaeplastida
Solyc11g008140.3.1 No alias pectate lyase 0.02 Archaeplastida
Zm00001e024959_P001 No alias pectate lyase 0.03 Archaeplastida
Zm00001e037311_P001 No alias pectate lyase 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 135 317
No external refs found!