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Description : splicing factor (RGH3)
Gene families : OG0007012 (Archaeplastida) Phylogenetic Tree(s): OG0007012_tree ,
OG_05_0005443 (LandPlants) Phylogenetic Tree(s): OG_05_0005443_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Mp8g15710.1 | |
| Cluster | HCCA: Cluster_111 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00099p00102890 | evm_27.TU.AmTr_v1... | Zinc finger CCCH domain-containing protein 5... | 0.02 | Archaeplastida | |
| Gb_17922 | No alias | Zinc finger CCCH domain-containing protein 5... | 0.02 | Archaeplastida | |
| Gb_17923 | No alias | Zinc finger CCCH domain-containing protein 5... | 0.03 | Archaeplastida | |
| MA_118860g0010 | No alias | Zinc finger CCCH domain-containing protein 16 OS=Oryza... | 0.04 | Archaeplastida | |
| Pp3c3_25240V3.1 | No alias | Zinc finger C-x8-C-x5-C-x3-H type family protein | 0.05 | Archaeplastida | |
| Solyc01g103090.4.1 | No alias | splicing factor (RGH3) | 0.02 | Archaeplastida | |
| Zm00001e014831_P001 | No alias | splicing factor (RGH3) | 0.07 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003678 | DNA helicase activity | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0004386 | helicase activity | IEP | Neighborhood |
| MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | Neighborhood |
| MF | GO:0005096 | GTPase activator activity | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006260 | DNA replication | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| MF | GO:0008047 | enzyme activator activity | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| MF | GO:0030234 | enzyme regulator activity | IEP | Neighborhood |
| MF | GO:0030695 | GTPase regulator activity | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| MF | GO:0043138 | 3'-5' DNA helicase activity | IEP | Neighborhood |
| BP | GO:0043631 | RNA polyadenylation | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| MF | GO:0060589 | nucleoside-triphosphatase regulator activity | IEP | Neighborhood |
| MF | GO:0070566 | adenylyltransferase activity | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0098772 | molecular function regulator | IEP | Neighborhood |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 301 | 357 |
| No external refs found! |