AT4G14342

Description : Splicing factor 3B subunit 5/RDS3 complex subunit 10

Gene families : OG0003479 (Archaeplastida) Phylogenetic Tree(s): OG0003479_tree ,
OG_05_0003834 (LandPlants) Phylogenetic Tree(s): OG_05_0003834_tree ,
OG_06_0003710 (SeedPlants) Phylogenetic Tree(s): OG_06_0003710_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G14342
Cluster	HCCA: Cluster_137

Target	Alias	Description	ECC score	Gene Family Method
Cre14.g627900	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	Archaeplastida
MA_120172g0010	No alias	component SF3B5 of splicing factor 3B complex	0.07	Archaeplastida
Pp3c25_1640V3.1	No alias	Splicing factor 3B subunit 5/RDS3 complex subunit 10	0.02	Archaeplastida
Solyc08g069080.4.1	No alias	component SF3B5 of splicing factor 3B complex	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	ISS	Interproscan
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000036	acyl carrier activity	IEP	Neighborhood
CC	GO:0000930	gamma-tubulin complex	IEP	Neighborhood
CC	GO:0000931	gamma-tubulin large complex	IEP	Neighborhood
CC	GO:0005635	nuclear envelope	IEP	Neighborhood
CC	GO:0005732	small nucleolar ribonucleoprotein complex	IEP	Neighborhood
CC	GO:0005739	mitochondrion	IEP	Neighborhood
CC	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex	IEP	Neighborhood
CC	GO:0005819	spindle	IEP	Neighborhood
CC	GO:0005828	kinetochore microtubule	IEP	Neighborhood
CC	GO:0005829	cytosol	IEP	Neighborhood
CC	GO:0005874	microtubule	IEP	Neighborhood
CC	GO:0005876	spindle microtubule	IEP	Neighborhood
BP	GO:0006743	ubiquinone metabolic process	IEP	Neighborhood
BP	GO:0006744	ubiquinone biosynthetic process	IEP	Neighborhood
BP	GO:0007021	tubulin complex assembly	IEP	Neighborhood
BP	GO:0007051	spindle organization	IEP	Neighborhood
BP	GO:0007052	mitotic spindle organization	IEP	Neighborhood
CC	GO:0008274	gamma-tubulin ring complex	IEP	Neighborhood
MF	GO:0008320	protein transmembrane transporter activity	IEP	Neighborhood
MF	GO:0008565	protein transporter activity	IEP	Neighborhood
CC	GO:0009507	chloroplast	IEP	Neighborhood
CC	GO:0009524	phragmoplast	IEP	Neighborhood
CC	GO:0009527	plastid outer membrane	IEP	Neighborhood
CC	GO:0009536	plastid	IEP	Neighborhood
CC	GO:0009574	preprophase band	IEP	Neighborhood
MF	GO:0015450	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	Neighborhood
CC	GO:0031967	organelle envelope	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
CC	GO:0031975	envelope	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0042180	cellular ketone metabolic process	IEP	Neighborhood
BP	GO:0042181	ketone biosynthetic process	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044450	microtubule organizing center part	IEP	Neighborhood
MF	GO:0044620	ACP phosphopantetheine attachment site binding	IEP	Neighborhood
MF	GO:0051192	prosthetic group binding	IEP	Neighborhood
BP	GO:0051418	microtubule nucleation by microtubule organizing center	IEP	Neighborhood
CC	GO:0072686	mitotic spindle	IEP	Neighborhood
CC	GO:0099080	supramolecular complex	IEP	Neighborhood
CC	GO:0099081	supramolecular polymer	IEP	Neighborhood
CC	GO:0099512	supramolecular fiber	IEP	Neighborhood
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	Neighborhood
MF	GO:0140104	molecular carrier activity	IEP	Neighborhood
BP	GO:1901661	quinone metabolic process	IEP	Neighborhood
BP	GO:1901663	quinone biosynthetic process	IEP	Neighborhood
BP	GO:1902850	microtubule cytoskeleton organization involved in mitosis	IEP	Neighborhood
MF	GO:1904680	peptide transmembrane transporter activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR009846	SF3b5/RDS3-10	5	82

External Links

No external refs found!

AT4G14342

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation