Description : Splicing factor 3B subunit 5/RDS3 complex subunit 10
Gene families : OG0003479 (Archaeplastida) Phylogenetic Tree(s): OG0003479_tree ,
OG_05_0003834 (LandPlants) Phylogenetic Tree(s): OG_05_0003834_tree ,
OG_06_0003710 (SeedPlants) Phylogenetic Tree(s): OG_06_0003710_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT4G14342 | |
Cluster | HCCA: Cluster_137 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cre14.g627900 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.03 | Archaeplastida | |
MA_120172g0010 | No alias | component SF3B5 of splicing factor 3B complex | 0.07 | Archaeplastida | |
Pp3c25_1640V3.1 | No alias | Splicing factor 3B subunit 5/RDS3 complex subunit 10 | 0.02 | Archaeplastida | |
Solyc08g069080.4.1 | No alias | component SF3B5 of splicing factor 3B complex | 0.05 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000398 | mRNA splicing, via spliceosome | ISS | Interproscan |
MF | GO:0003674 | molecular_function | ND | Interproscan |
CC | GO:0005634 | nucleus | ISM | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000036 | acyl carrier activity | IEP | Neighborhood |
CC | GO:0000930 | gamma-tubulin complex | IEP | Neighborhood |
CC | GO:0000931 | gamma-tubulin large complex | IEP | Neighborhood |
CC | GO:0005635 | nuclear envelope | IEP | Neighborhood |
CC | GO:0005732 | small nucleolar ribonucleoprotein complex | IEP | Neighborhood |
CC | GO:0005739 | mitochondrion | IEP | Neighborhood |
CC | GO:0005744 | TIM23 mitochondrial import inner membrane translocase complex | IEP | Neighborhood |
CC | GO:0005819 | spindle | IEP | Neighborhood |
CC | GO:0005828 | kinetochore microtubule | IEP | Neighborhood |
CC | GO:0005829 | cytosol | IEP | Neighborhood |
CC | GO:0005874 | microtubule | IEP | Neighborhood |
CC | GO:0005876 | spindle microtubule | IEP | Neighborhood |
BP | GO:0006743 | ubiquinone metabolic process | IEP | Neighborhood |
BP | GO:0006744 | ubiquinone biosynthetic process | IEP | Neighborhood |
BP | GO:0007021 | tubulin complex assembly | IEP | Neighborhood |
BP | GO:0007051 | spindle organization | IEP | Neighborhood |
BP | GO:0007052 | mitotic spindle organization | IEP | Neighborhood |
CC | GO:0008274 | gamma-tubulin ring complex | IEP | Neighborhood |
MF | GO:0008320 | protein transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0008565 | protein transporter activity | IEP | Neighborhood |
CC | GO:0009507 | chloroplast | IEP | Neighborhood |
CC | GO:0009524 | phragmoplast | IEP | Neighborhood |
CC | GO:0009527 | plastid outer membrane | IEP | Neighborhood |
CC | GO:0009536 | plastid | IEP | Neighborhood |
CC | GO:0009574 | preprophase band | IEP | Neighborhood |
MF | GO:0015450 | P-P-bond-hydrolysis-driven protein transmembrane transporter activity | IEP | Neighborhood |
CC | GO:0019867 | outer membrane | IEP | Neighborhood |
MF | GO:0022884 | macromolecule transmembrane transporter activity | IEP | Neighborhood |
CC | GO:0031967 | organelle envelope | IEP | Neighborhood |
CC | GO:0031968 | organelle outer membrane | IEP | Neighborhood |
CC | GO:0031975 | envelope | IEP | Neighborhood |
CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
BP | GO:0042180 | cellular ketone metabolic process | IEP | Neighborhood |
BP | GO:0042181 | ketone biosynthetic process | IEP | Neighborhood |
CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
CC | GO:0044450 | microtubule organizing center part | IEP | Neighborhood |
MF | GO:0044620 | ACP phosphopantetheine attachment site binding | IEP | Neighborhood |
MF | GO:0051192 | prosthetic group binding | IEP | Neighborhood |
BP | GO:0051418 | microtubule nucleation by microtubule organizing center | IEP | Neighborhood |
CC | GO:0072686 | mitotic spindle | IEP | Neighborhood |
CC | GO:0099080 | supramolecular complex | IEP | Neighborhood |
CC | GO:0099081 | supramolecular polymer | IEP | Neighborhood |
CC | GO:0099512 | supramolecular fiber | IEP | Neighborhood |
CC | GO:0099513 | polymeric cytoskeletal fiber | IEP | Neighborhood |
MF | GO:0140104 | molecular carrier activity | IEP | Neighborhood |
BP | GO:1901661 | quinone metabolic process | IEP | Neighborhood |
BP | GO:1901663 | quinone biosynthetic process | IEP | Neighborhood |
BP | GO:1902850 | microtubule cytoskeleton organization involved in mitosis | IEP | Neighborhood |
MF | GO:1904680 | peptide transmembrane transporter activity | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR009846 | SF3b5/RDS3-10 | 5 | 82 |
No external refs found! |