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  5. Pp3c10_19570V3.1

Pp3c10_19570V3.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0005481 (Archaeplastida) Phylogenetic Tree(s): OG0005481_tree ,
OG_05_0004519 (LandPlants) Phylogenetic Tree(s): OG_05_0004519_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c10_19570V3.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00224p00011500 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein MRL1,... 0.02 Archaeplastida
AMTR_s00357p00011320 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AMTR_s00451p00003410 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein MRL1,... 0.04 Archaeplastida
AT4G34830 MRL1 Pentatricopeptide repeat (PPR) superfamily protein 0.11 Archaeplastida
GSVIVT01024119001 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.1 Archaeplastida
Gb_33501 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.09 Archaeplastida
LOC_Os10g10170.1 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.11 Archaeplastida
MA_10429571g0010 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.09 Archaeplastida
MA_122602g0010 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.07 Archaeplastida
Mp3g17150.1 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.05 Archaeplastida
Mp3g17160.1 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.06 Archaeplastida
Smo115078 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.04 Archaeplastida
Smo169254 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.07 Archaeplastida
Solyc01g111020.3.1 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.08 Archaeplastida
Zm00001e002719_P003 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006090 pyruvate metabolic process IEP Neighborhood
BP GO:0006096 glycolytic process IEP Neighborhood
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006757 ATP generation from ADP IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0009132 nucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009166 nucleotide catabolic process IEP Neighborhood
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016832 aldehyde-lyase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Neighborhood
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0042866 pyruvate biosynthetic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0046031 ADP metabolic process IEP Neighborhood
BP GO:0046939 nucleotide phosphorylation IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901292 nucleoside phosphate catabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!