1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c10_20120V3.1

Pp3c10_20120V3.1


Description : Pectin lyase-like superfamily protein


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c10_20120V3.1
Cluster HCCA: Cluster_251

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00264370 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00027p00247950 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
AMTR_s00056p00166920 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00123p00050980 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AT1G05310 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT2G19150 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT2G36710 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT2G47280 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G19730 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G26810 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01009729001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.01 Archaeplastida
GSVIVT01014641001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01023786001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01028170001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01031250001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01034985001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
Gb_01459 No alias pectin methylesterase 0.02 Archaeplastida
Gb_01460 No alias pectin methylesterase 0.02 Archaeplastida
Gb_17798 No alias pectin methylesterase 0.02 Archaeplastida
Gb_27225 No alias pectin methylesterase 0.02 Archaeplastida
Gb_38324 No alias pectin methylesterase 0.03 Archaeplastida
Gb_39595 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os01g19440.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os05g44600.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os09g39760.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os11g45720.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os12g37660.1 No alias pectin methylesterase 0.02 Archaeplastida
MA_10267810g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_10428610g0010 No alias pectin methylesterase 0.04 Archaeplastida
MA_18312g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_304854g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_6149868g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_66089g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_87592g0010 No alias pectin methylesterase 0.04 Archaeplastida
Mp1g00190.1 No alias pectin methylesterase 0.03 Archaeplastida
Mp1g17560.1 No alias pectin methylesterase 0.04 Archaeplastida
Mp2g01420.1 No alias pectin methylesterase 0.03 Archaeplastida
Mp2g19430.1 No alias pectin methylesterase 0.03 Archaeplastida
Mp3g01170.1 No alias pectin methylesterase 0.04 Archaeplastida
Mp5g03920.1 No alias pectin methylesterase 0.05 Archaeplastida
Mp5g03930.1 No alias pectin methylesterase 0.05 Archaeplastida
Pp3c12_23790V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c16_19430V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c19_8330V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c1_6010V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c25_3840V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c25_760V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c3_30560V3.1 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
Pp3c3_32350V3.1 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
Pp3c3_35240V3.1 No alias Pectin lyase-like superfamily protein 0.07 Archaeplastida
Pp3c5_12660V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c5_12770V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c5_12820V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.06 Archaeplastida
Solyc02g075620.4.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc05g052110.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc05g052120.4.1 No alias No annotation 0.03 Archaeplastida
Solyc05g053680.1.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc07g043240.4.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc10g083820.2.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc12g099230.2.1 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e020795_P001 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e027944_P002 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e032213_P001 No alias pectin methylesterase 0.01 Archaeplastida
Zm00001e033546_P001 No alias pectin methylesterase 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!