Aliases : ATCFM3B, CFM3B
Description : CRM family member 3B
Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0000737 (LandPlants) Phylogenetic Tree(s): OG_05_0000737_tree ,
OG_06_0001068 (SeedPlants) Phylogenetic Tree(s): OG_06_0001068_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT4G14510 | |
Cluster | HCCA: Cluster_76 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00045p00114550 | evm_27.TU.AmTr_v1... | RNA processing.organelle machineries.RNA... | 0.04 | Archaeplastida | |
AMTR_s00079p00107040 | evm_27.TU.AmTr_v1... | CRM-domain containing factor CFM3,... | 0.04 | Archaeplastida | |
AMTR_s00079p00185530 | evm_27.TU.AmTr_v1... | RNA processing.organelle machineries.RNA... | 0.05 | Archaeplastida | |
AT4G29750 | No alias | CRS1 / YhbY (CRM) domain-containing protein | 0.03 | Archaeplastida | |
GSVIVT01008296001 | No alias | CRM-domain containing factor CFM3,... | 0.03 | Archaeplastida | |
GSVIVT01015193001 | No alias | RNA processing.organelle machineries.RNA... | 0.02 | Archaeplastida | |
GSVIVT01018109001 | No alias | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
GSVIVT01031001001 | No alias | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
GSVIVT01032542001 | No alias | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
Gb_18301 | No alias | CRM-domain containing factor CFM2, chloroplastic... | 0.03 | Archaeplastida | |
Gb_18302 | No alias | CRM-domain containing factor CFM2, chloroplastic... | 0.04 | Archaeplastida | |
Gb_18303 | No alias | CRM-domain containing factor CFM2, chloroplastic... | 0.04 | Archaeplastida | |
Gb_37638 | No alias | CFM2-type plastidial RNA splicing factor. CFM3-type... | 0.05 | Archaeplastida | |
LOC_Os04g39060.2 | No alias | CRM-domain containing factor CFM2, chloroplastic... | 0.03 | Archaeplastida | |
LOC_Os05g47850.1 | No alias | CRM-domain containing factor CFM3,... | 0.02 | Archaeplastida | |
LOC_Os08g27150.1 | No alias | CRS1 plastidial RNA splicing factor | 0.03 | Archaeplastida | |
LOC_Os09g19850.1 | No alias | CRM-domain containing factor CFM3,... | 0.05 | Archaeplastida | |
LOC_Os11g37990.1 | No alias | CFM3-type plastidial RNA splicing factor | 0.04 | Archaeplastida | |
MA_10432072g0010 | No alias | CFM2-type plastidial RNA splicing factor | 0.05 | Archaeplastida | |
MA_10435740g0010 | No alias | CFM2-type plastidial RNA splicing factor | 0.02 | Archaeplastida | |
Mp3g06280.1 | No alias | CRM-domain containing factor CFM3,... | 0.02 | Archaeplastida | |
Pp3c12_15870V3.1 | No alias | CRM family member 2 | 0.02 | Archaeplastida | |
Pp3c13_17270V3.1 | No alias | CRM family member 2 | 0.03 | Archaeplastida | |
Smo412905 | No alias | CRM-domain containing factor CFM3,... | 0.02 | Archaeplastida | |
Solyc03g119450.3.1 | No alias | CRM-domain containing factor CFM3,... | 0.04 | Archaeplastida | |
Solyc07g039500.4.1 | No alias | CRM-domain containing factor CFM3,... | 0.05 | Archaeplastida | |
Solyc09g083350.3.1 | No alias | CFM3-type plastidial RNA splicing factor | 0.05 | Archaeplastida | |
Zm00001e011272_P001 | No alias | CFM3-type plastidial RNA splicing factor | 0.04 | Archaeplastida | |
Zm00001e032339_P002 | No alias | CRM-domain containing factor CFM3,... | 0.04 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0009507 | chloroplast | ISM | Interproscan |
BP | GO:0048316 | seed development | IGI | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000023 | maltose metabolic process | IEP | Neighborhood |
BP | GO:0000271 | polysaccharide biosynthetic process | IEP | Neighborhood |
BP | GO:0000373 | Group II intron splicing | IEP | Neighborhood |
MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003727 | single-stranded RNA binding | IEP | Neighborhood |
MF | GO:0003729 | mRNA binding | IEP | Neighborhood |
MF | GO:0004527 | exonuclease activity | IEP | Neighborhood |
MF | GO:0004808 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity | IEP | Neighborhood |
MF | GO:0005315 | inorganic phosphate transmembrane transporter activity | IEP | Neighborhood |
BP | GO:0005976 | polysaccharide metabolic process | IEP | Neighborhood |
BP | GO:0005982 | starch metabolic process | IEP | Neighborhood |
BP | GO:0005984 | disaccharide metabolic process | IEP | Neighborhood |
BP | GO:0006073 | cellular glucan metabolic process | IEP | Neighborhood |
BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Neighborhood |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Neighborhood |
MF | GO:0008187 | poly-pyrimidine tract binding | IEP | Neighborhood |
MF | GO:0008266 | poly(U) RNA binding | IEP | Neighborhood |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Neighborhood |
BP | GO:0009250 | glucan biosynthetic process | IEP | Neighborhood |
BP | GO:0009311 | oligosaccharide metabolic process | IEP | Neighborhood |
BP | GO:0009451 | RNA modification | IEP | Neighborhood |
BP | GO:0009790 | embryo development | IEP | Neighborhood |
BP | GO:0009793 | embryo development ending in seed dormancy | IEP | Neighborhood |
BP | GO:0010098 | suspensor development | IEP | Neighborhood |
BP | GO:0010304 | PSII associated light-harvesting complex II catabolic process | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
BP | GO:0019252 | starch biosynthetic process | IEP | Neighborhood |
BP | GO:0033692 | cellular polysaccharide biosynthetic process | IEP | Neighborhood |
BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | Neighborhood |
BP | GO:0044042 | glucan metabolic process | IEP | Neighborhood |
BP | GO:0044257 | cellular protein catabolic process | IEP | Neighborhood |
BP | GO:0044262 | cellular carbohydrate metabolic process | IEP | Neighborhood |
BP | GO:0044264 | cellular polysaccharide metabolic process | IEP | Neighborhood |
BP | GO:0045292 | mRNA cis splicing, via spliceosome | IEP | Neighborhood |
BP | GO:0048445 | carpel morphogenesis | IEP | Neighborhood |
BP | GO:0048564 | photosystem I assembly | IEP | Neighborhood |
MF | GO:0051499 | D-aminoacyl-tRNA deacylase activity | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
BP | GO:0090698 | post-embryonic plant morphogenesis | IEP | Neighborhood |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Neighborhood |
No external refs found! |