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  5. Pp3c10_24670V3.1

Pp3c10_24670V3.1


Description : pentatricopeptide (PPR) repeat-containing protein


Gene families : OG0003182 (Archaeplastida) Phylogenetic Tree(s): OG0003182_tree ,
OG_05_0023292 (LandPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c10_24670V3.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00027590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g30610,... 0.03 Archaeplastida
AT1G30610 EMB2279, EMB88 pentatricopeptide (PPR) repeat-containing protein 0.11 Archaeplastida
AT5G67570 EMB1408, DG1, EMB246 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
GSVIVT01002074001 No alias Pentatricopeptide repeat-containing protein At5g67570,... 0.04 Archaeplastida
GSVIVT01021752001 No alias Pentatricopeptide repeat-containing protein At1g30610,... 0.04 Archaeplastida
Gb_38669 No alias Pentatricopeptide repeat-containing protein At1g30610,... 0.05 Archaeplastida
LOC_Os01g48380.1 No alias Pentatricopeptide repeat-containing protein At1g30610,... 0.03 Archaeplastida
LOC_Os05g25060.1 No alias Pentatricopeptide repeat-containing protein At5g67570,... 0.05 Archaeplastida
MA_10429917g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp4g21410.1 No alias Pentatricopeptide repeat-containing protein At5g67570,... 0.03 Archaeplastida
Solyc02g069570.3.1 No alias Pentatricopeptide repeat-containing protein At1g30610,... 0.08 Archaeplastida
Solyc02g092310.4.1 No alias Pentatricopeptide repeat-containing protein At5g67570,... 0.06 Archaeplastida
Solyc02g092320.2.1 No alias Pentatricopeptide repeat-containing protein At5g67570,... 0.07 Archaeplastida
Zm00001e028053_P001 No alias Pentatricopeptide repeat-containing protein At1g30610,... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 733 762
IPR002885 Pentatricopeptide_repeat 575 602
IPR002885 Pentatricopeptide_repeat 657 708
IPR002885 Pentatricopeptide_repeat 799 847
No external refs found!