1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c10_2500V3.1

Pp3c10_2500V3.1


Description : ubiquitin fusion degradation 1


Gene families : OG0001719 (Archaeplastida) Phylogenetic Tree(s): OG0001719_tree ,
OG_05_0003202 (LandPlants) Phylogenetic Tree(s): OG_05_0003202_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c10_2500V3.1
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
Cre14.g613350 No alias Protein degradation.ER-associated protein degradation... 0.04 Archaeplastida
LOC_Os04g48770.2 No alias component UFD1 of ER-associated protein degradation... 0.02 Archaeplastida
Zm00001e007182_P005 No alias component UFD1 of ER-associated protein degradation... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0097526 spliceosomal tri-snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!