AT1G18080 (ATARCA, RACK1A, RACK1A_AT)


Aliases : ATARCA, RACK1A, RACK1A_AT

Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG0002844 (Archaeplastida) Phylogenetic Tree(s): OG0002844_tree ,
OG_05_0002983 (LandPlants) Phylogenetic Tree(s): OG_05_0002983_tree ,
OG_06_0003274 (SeedPlants) Phylogenetic Tree(s): OG_06_0003274_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G18080
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00105p00058690 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
AT1G48630 RACK1B_AT receptor for activated C kinase 1B 0.08 Archaeplastida
Cpa|evm.model.tig00000169.6 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 Archaeplastida
Cre06.g278222 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
GSVIVT01008395001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 Archaeplastida
Gb_33900 No alias associated component RACK1 of SSU proteome 0.03 Archaeplastida
LOC_Os01g49290.1 No alias associated component RACK1 of SSU proteome 0.09 Archaeplastida
LOC_Os05g47890.1 No alias associated component RACK1 of SSU proteome 0.07 Archaeplastida
MA_10435947g0010 No alias Guanine nucleotide-binding protein subunit beta-like... 0.07 Archaeplastida
Mp3g15630.1 No alias associated component RACK1 of SSU proteome 0.13 Archaeplastida
Pp3c16_13180V3.1 No alias receptor for activated C kinase 1B 0.09 Archaeplastida
Pp3c27_6040V3.1 No alias receptor for activated C kinase 1B 0.09 Archaeplastida
Pp3c5_770V3.1 No alias receptor for activated C kinase 1B 0.11 Archaeplastida
Smo266532 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
Solyc03g119040.3.1 No alias associated component RACK1 of SSU proteome 0.11 Archaeplastida
Solyc06g069010.3.1 No alias associated component RACK1 of SSU proteome 0.12 Archaeplastida
Zm00001e026456_P001 No alias associated component RACK1 of SSU proteome 0.14 Archaeplastida
Zm00001e032340_P001 No alias associated component RACK1 of SSU proteome 0.13 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005834 heterotrimeric G-protein complex ISS Interproscan
CC GO:0005886 plasma membrane ISM Interproscan
BP GO:0006094 gluconeogenesis RCA Interproscan
BP GO:0006096 glycolytic process RCA Interproscan
BP GO:0006417 regulation of translation IGI Interproscan
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process RCA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
BP GO:0009651 response to salt stress RCA Interproscan
BP GO:0009739 response to gibberellin IEP Interproscan
BP GO:0009845 seed germination IGI Interproscan
BP GO:0010476 gibberellin mediated signaling pathway IMP Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
BP GO:0042254 ribosome biogenesis IGI Interproscan
BP GO:0046686 response to cadmium ion IEP Interproscan
BP GO:0046686 response to cadmium ion RCA Interproscan
BP GO:0071215 cellular response to abscisic acid stimulus IEP Interproscan
Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IEP Neighborhood
CC GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003727 single-stranded RNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003938 IMP dehydrogenase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005654 nucleoplasm IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005747 mitochondrial respiratory chain complex I IEP Neighborhood
CC GO:0005753 mitochondrial proton-transporting ATP synthase complex IEP Neighborhood
CC GO:0005773 vacuole IEP Neighborhood
CC GO:0005774 vacuolar membrane IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0006177 GMP biosynthetic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008143 poly(A) binding IEP Neighborhood
MF GO:0008187 poly-pyrimidine tract binding IEP Neighborhood
MF GO:0008266 poly(U) RNA binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0009163 nucleoside biosynthetic process IEP Neighborhood
BP GO:0009269 response to desiccation IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
BP GO:0009631 cold acclimation IEP Neighborhood
BP GO:0009664 plant-type cell wall organization IEP Neighborhood
BP GO:0009790 embryo development IEP Neighborhood
BP GO:0009793 embryo development ending in seed dormancy IEP Neighborhood
BP GO:0009853 photorespiration IEP Neighborhood
CC GO:0015030 Cajal body IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
CC GO:0015935 small ribosomal subunit IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0016469 proton-transporting two-sector ATPase complex IEP Neighborhood
BP GO:0016553 base conversion or substitution editing IEP Neighborhood
BP GO:0016554 cytidine to uridine editing IEP Neighborhood
CC GO:0016604 nuclear body IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0022625 cytosolic large ribosomal subunit IEP Neighborhood
CC GO:0022627 cytosolic small ribosomal subunit IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
CC GO:0030964 NADH dehydrogenase complex IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0032392 DNA geometric change IEP Neighborhood
BP GO:0032508 DNA duplex unwinding IEP Neighborhood
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0035966 response to topologically incorrect protein IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
BP GO:0042451 purine nucleoside biosynthetic process IEP Neighborhood
BP GO:0042455 ribonucleoside biosynthetic process IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043094 cellular metabolic compound salvage IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043457 regulation of cellular respiration IEP Neighborhood
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
CC GO:0045259 proton-transporting ATP synthase complex IEP Neighborhood
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Neighborhood
CC GO:0045271 respiratory chain complex I IEP Neighborhood
BP GO:0046037 GMP metabolic process IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Neighborhood
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Neighborhood
MF GO:0050897 cobalt ion binding IEP Neighborhood
BP GO:0051788 response to misfolded protein IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
MF GO:0070717 poly-purine tract binding IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0080129 proteasome core complex assembly IEP Neighborhood
BP GO:0080156 mitochondrial mRNA modification IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
CC GO:0098803 respiratory chain complex IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:1900864 mitochondrial RNA modification IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 187 222
IPR001680 WD40_repeat 98 133
IPR001680 WD40_repeat 138 180
IPR001680 WD40_repeat 226 262
IPR001680 WD40_repeat 9 44
IPR001680 WD40_repeat 56 91
IPR001680 WD40_repeat 299 322
No external refs found!