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  5. Pp3c11_11830V3.1

Pp3c11_11830V3.1


Description : plastid transcriptionally active 2


Gene families : OG0008584 (Archaeplastida) Phylogenetic Tree(s): OG0008584_tree ,
OG_05_0007907 (LandPlants) Phylogenetic Tree(s): OG_05_0007907_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c11_11830V3.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00097240 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.07 Archaeplastida
AT1G74850 PTAC2 plastid transcriptionally active 2 0.16 Archaeplastida
GSVIVT01007844001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 Archaeplastida
LOC_Os03g60910.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.08 Archaeplastida
MA_140582g0010 No alias Pentatricopeptide repeat-containing protein At1g74850,... 0.06 Archaeplastida
Mp7g11380.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.07 Archaeplastida
Smo167316 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 Archaeplastida
Solyc03g113630.3.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.02 Archaeplastida
Zm00001e035964_P003 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004109 coproporphyrinogen oxidase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!