Description : Ribosomal protein L13 family protein
Gene families : OG0002232 (Archaeplastida) Phylogenetic Tree(s): OG0002232_tree ,
OG_05_0002287 (LandPlants) Phylogenetic Tree(s): OG_05_0002287_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Pp3c11_17280V3.1 | |
Cluster | HCCA: Cluster_124 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00044p00144180 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.06 | Archaeplastida | |
AMTR_s00089p00040540 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.17 | Archaeplastida | |
AT3G07110 | No alias | Ribosomal protein L13 family protein | 0.18 | Archaeplastida | |
AT3G24830 | No alias | Ribosomal protein L13 family protein | 0.31 | Archaeplastida | |
AT4G13170 | No alias | Ribosomal protein L13 family protein | 0.06 | Archaeplastida | |
AT5G48760 | No alias | Ribosomal protein L13 family protein | 0.26 | Archaeplastida | |
Cpa|evm.model.tig00000792.29 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.21 | Archaeplastida | |
Cre12.g532550 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.14 | Archaeplastida | |
GSVIVT01021080001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.13 | Archaeplastida | |
GSVIVT01028661001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.06 | Archaeplastida | |
LOC_Os03g54890.1 | No alias | component RPL13a of LSU proteome component | 0.19 | Archaeplastida | |
LOC_Os07g01870.1 | No alias | component RPL13a of LSU proteome component | 0.04 | Archaeplastida | |
MA_186340g0010 | No alias | component RPL13a of LSU proteome component | 0.18 | Archaeplastida | |
Mp2g08690.1 | No alias | component RPL13a of LSU proteome component | 0.26 | Archaeplastida | |
Mp4g15790.1 | No alias | component RPL13a of LSU proteome component | 0.27 | Archaeplastida | |
Smo166650 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.11 | Archaeplastida | |
Solyc05g053670.3.1 | No alias | component RPL13a of LSU proteome component | 0.23 | Archaeplastida | |
Solyc09g091740.4.1 | No alias | component RPL13a of LSU proteome component | 0.23 | Archaeplastida | |
Solyc12g098330.3.1 | No alias | no hits & (original description: none) | 0.19 | Archaeplastida | |
Zm00001e005719_P002 | No alias | component RPL13a of LSU proteome component | 0.24 | Archaeplastida | |
Zm00001e012017_P002 | No alias | component RPL13a of LSU proteome component | 0.19 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Neighborhood |
BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
BP | GO:0006413 | translational initiation | IEP | Neighborhood |
BP | GO:0009451 | RNA modification | IEP | Neighborhood |
BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
MF | GO:0031369 | translation initiation factor binding | IEP | Neighborhood |
BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR005822 | Ribosomal_L13 | 12 | 120 |
No external refs found! |