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  5. Pp3c11_23140V3.1

Pp3c11_23140V3.1


Description : plastid transcriptionally active 17


Gene families : OG0000971 (Archaeplastida) Phylogenetic Tree(s): OG0000971_tree ,
OG_05_0003359 (LandPlants) Phylogenetic Tree(s): OG_05_0003359_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c11_23140V3.1
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00183310 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 Archaeplastida
AT1G15730 No alias Cobalamin biosynthesis CobW-like protein 0.03 Archaeplastida
AT1G80480 PTAC17 plastid transcriptionally active 17 0.07 Archaeplastida
GSVIVT01017471001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.06 Archaeplastida
Gb_00365 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
Gb_13256 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.04 Archaeplastida
LOC_Os02g55630.1 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.1 Archaeplastida
MA_10426227g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_174309g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp1g05690.1 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.05 Archaeplastida
Smo405512 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 Archaeplastida
Solyc03g117430.3.1 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.02 Archaeplastida
Zm00001e016143_P001 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR003495 CobW/HypB/UreG_dom 121 305
IPR011629 Cbl_biosynth_CobW-like_C 400 494
No external refs found!