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  5. Pp3c11_2890V3.1

Pp3c11_2890V3.1


Description : pre-mRNA-processing protein 40C


Gene families : OG0007099 (Archaeplastida) Phylogenetic Tree(s): OG0007099_tree ,
OG_05_0007306 (LandPlants) Phylogenetic Tree(s): OG_05_0007306_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c11_2890V3.1
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00102340 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
LOC_Os10g34380.1 No alias pre-mRNA-processing protein (PRP40C) 0.03 Archaeplastida
MA_10430753g0010 No alias pre-mRNA-processing protein (PRP40C) 0.02 Archaeplastida
Mp5g09830.1 No alias pre-mRNA-processing protein (PRP40C) 0.03 Archaeplastida
Smo439648 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Solyc04g008700.3.1 No alias pre-mRNA-processing protein (PRP40C) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!