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  5. Pp3c11_4840V3.1

Pp3c11_4840V3.1


Description : DEAD/DEAH box RNA helicase family protein


Gene families : OG0005319 (Archaeplastida) Phylogenetic Tree(s): OG0005319_tree ,
OG_05_0007211 (LandPlants) Phylogenetic Tree(s): OG_05_0007211_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c11_4840V3.1
Cluster HCCA: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00112500 evm_27.TU.AmTr_v1... ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana 0.07 Archaeplastida
AT1G27880 No alias DEAD/DEAH box RNA helicase family protein 0.11 Archaeplastida
Cre15.g634701 No alias ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01010342001 No alias ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os04g40970.1 No alias ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis... 0.05 Archaeplastida
MA_373278g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp6g05780.1 No alias ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis... 0.03 Archaeplastida
Solyc05g014690.3.1 No alias ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e041104_P001 No alias ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!