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  5. Pp3c11_7720V3.1

Pp3c11_7720V3.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c11_7720V3.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00232800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.02 Archaeplastida
AMTR_s00019p00080380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g59720,... 0.02 Archaeplastida
AMTR_s00022p00156450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Archaeplastida
AMTR_s00030p00109240 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00049p00223290 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00053p00090700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.02 Archaeplastida
AMTR_s00099p00097640 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.02 Archaeplastida
AT1G08070 OTP82 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT2G41080 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G29230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Cpa|evm.model.tig00001038.5 No alias No description available 0.02 Archaeplastida
GSVIVT01017209001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01025607001 No alias Pentatricopeptide repeat-containing protein At5g42450,... 0.02 Archaeplastida
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
GSVIVT01035491001 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
Gb_04844 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_10726 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_21824 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
Gb_23023 No alias RNA editing factor (OTP82) 0.02 Archaeplastida
Gb_23798 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Gb_26260 No alias RNA editing factor (MEF7) 0.02 Archaeplastida
Gb_32256 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
Gb_38938 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
LOC_Os01g66160.1 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Archaeplastida
LOC_Os02g44480.1 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.02 Archaeplastida
LOC_Os03g04390.1 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 Archaeplastida
LOC_Os04g14130.1 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.04 Archaeplastida
MA_10138132g0010 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.02 Archaeplastida
MA_10164206g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_10429069g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_16823g0010 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
MA_17949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_30949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_31170g0010 No alias RNA editing factor (MEF19) 0.02 Archaeplastida
MA_34492g0020 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_381817g0020 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
MA_4438g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_50789g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_525914g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_86628g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_94165g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_9526611g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Pp3c27_5540V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Smo100621 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Smo181046 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Smo34638 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Archaeplastida
Smo47998 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.02 Archaeplastida
Smo83339 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
Smo88824 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Solyc01g081020.1.1 No alias RNA editing factor (OTP80) 0.02 Archaeplastida
Solyc03g114660.1.1 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.02 Archaeplastida
Solyc12g006575.1.1 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Zm00001e000301_P001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 Archaeplastida
Zm00001e000523_P001 No alias Pentatricopeptide repeat-containing protein At5g15300... 0.02 Archaeplastida
Zm00001e029119_P001 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.02 Archaeplastida
Zm00001e032499_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e035764_P001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!