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  5. Pp3c11_8810V3.1

Pp3c11_8810V3.1


Description : cleavage and polyadenylation specificity factor 160


Gene families : OG0003000 (Archaeplastida) Phylogenetic Tree(s): OG0003000_tree ,
OG_05_0006246 (LandPlants) Phylogenetic Tree(s): OG_05_0006246_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c11_8810V3.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AT5G51660 ATCPSF160, CPSF160 cleavage and polyadenylation specificity factor 160 0.04 Archaeplastida
Cre13.g573450 No alias Probable cleavage and polyadenylation specificity factor... 0.01 Archaeplastida
Gb_25539 No alias Cleavage and polyadenylation specificity factor subunit... 0.03 Archaeplastida
Gb_25540 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os04g18010.1 No alias component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.05 Archaeplastida
MA_10435523g0020 No alias Cleavage and polyadenylation specificity factor subunit... 0.03 Archaeplastida
MA_134192g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_169369g0010 No alias Cleavage and polyadenylation specificity factor subunit... 0.03 Archaeplastida
Smo82277 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.05 Archaeplastida
Solyc03g007100.3.1 No alias component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.04 Archaeplastida
Zm00001e008515_P003 No alias component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0032271 regulation of protein polymerization IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0044087 regulation of cellular component biogenesis IEP Neighborhood
MF GO:0048365 Rac GTPase binding IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051493 regulation of cytoskeleton organization IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
BP GO:1902903 regulation of supramolecular fiber organization IEP Neighborhood
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 1099 1421
No external refs found!