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  5. Pp3c12_11240V3.1

Pp3c12_11240V3.1


Description : Cleavage and polyadenylation specificity factor (CPSF) A subunit protein


Gene families : OG0002788 (Archaeplastida) Phylogenetic Tree(s): OG0002788_tree ,
OG_05_0006456 (LandPlants) Phylogenetic Tree(s): OG_05_0006456_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c12_11240V3.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AT3G55200 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.03 Archaeplastida
AT3G55220 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.08 Archaeplastida
Cpa|evm.model.tig00001024.5 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 Archaeplastida
Cpa|evm.model.tig00001024.6 No alias Spliceosome-associated protein 130 A OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre08.g372800 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 Archaeplastida
GSVIVT01005970001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 Archaeplastida
Gb_38044 No alias component SF3B3 of splicing factor 3B complex 0.05 Archaeplastida
LOC_Os02g04480.1 No alias component SF3B3 of splicing factor 3B complex 0.05 Archaeplastida
MA_10430596g0010 No alias component SF3B3 of splicing factor 3B complex 0.03 Archaeplastida
Mp7g13330.1 No alias component SF3B3 of splicing factor 3B complex 0.09 Archaeplastida
Smo171237 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
Solyc04g010260.3.1 No alias component SF3B3 of splicing factor 3B complex 0.06 Archaeplastida
Zm00001e013611_P001 No alias component SF3B3 of splicing factor 3B complex 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!