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  5. Pp3c12_11430V3.1

Pp3c12_11430V3.1


Description : Ribosomal protein L1p/L10e family


Gene families : OG0002233 (Archaeplastida) Phylogenetic Tree(s): OG0002233_tree ,
OG_05_0002168 (LandPlants) Phylogenetic Tree(s): OG_05_0002168_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c12_11430V3.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00108880 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT1G06380 No alias Ribosomal protein L1p/L10e family 0.06 Archaeplastida
AT2G42650 No alias Ribosomal protein L1p/L10e family 0.02 Archaeplastida
Cpa|evm.model.tig00021721.13 No alias No description available 0.05 Archaeplastida
Cre07.g314100 No alias No description available 0.13 Archaeplastida
GSVIVT01000789001 No alias No description available 0.06 Archaeplastida
Gb_31610 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os05g48422.1 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_173360g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_550291g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_9529545g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp1g11260.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc01g111420.3.1 No alias no hits & (original description: none) 0.09 Archaeplastida
Solyc04g008790.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e026491_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!