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  5. Pp3c12_4010V3.1

Pp3c12_4010V3.1


Description : DNA/RNA polymerases superfamily protein


Gene families : OG0002772 (Archaeplastida) Phylogenetic Tree(s): OG0002772_tree ,
OG_05_0002615 (LandPlants) Phylogenetic Tree(s): OG_05_0002615_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c12_4010V3.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00254180 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 Archaeplastida
AT1G68990 MGP3 male gametophyte defective 3 0.02 Archaeplastida
AT5G15700 No alias DNA/RNA polymerases superfamily protein 0.09 Archaeplastida
Cpa|evm.model.tig00021493.49 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 Archaeplastida
GSVIVT01023660001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 Archaeplastida
GSVIVT01036518001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.08 Archaeplastida
Gb_02899 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.04 Archaeplastida
LOC_Os09g07120.1 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.03 Archaeplastida
MA_122415g0010 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.02 Archaeplastida
Mp3g02090.1 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.08 Archaeplastida
Solyc05g010660.4.1 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.06 Archaeplastida
Zm00001e035572_P001 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!