AT4G16990 (RLM3)


Aliases : RLM3

Description : disease resistance protein (TIR-NBS class), putative


Gene families : OG0000061 (Archaeplastida) Phylogenetic Tree(s): OG0000061_tree ,
OG_05_0000769 (LandPlants) Phylogenetic Tree(s): OG_05_0000769_tree ,
OG_06_0000349 (SeedPlants) Phylogenetic Tree(s): OG_06_0000349_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G16990
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00126980 evm_27.TU.AmTr_v1... Disease resistance protein TAO1 OS=Arabidopsis thaliana 0.05 Archaeplastida
AT1G27180 No alias disease resistance protein (TIR-NBS-LRR class), putative 0.04 Archaeplastida
AT1G57650 No alias ATP binding 0.05 Archaeplastida
AT1G66090 No alias Disease resistance protein (TIR-NBS class) 0.03 Archaeplastida
AT1G72900 No alias Toll-Interleukin-Resistance (TIR) domain-containing protein 0.05 Archaeplastida
AT1G72910 No alias Toll-Interleukin-Resistance (TIR) domain-containing protein 0.05 Archaeplastida
AT2G16870 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.04 Archaeplastida
AT4G08450 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.04 Archaeplastida
AT4G11170 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.04 Archaeplastida
AT4G16857 No alias No description available 0.04 Archaeplastida
AT4G16920 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.04 Archaeplastida
AT4G16960 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.02 Archaeplastida
AT5G18350 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.04 Archaeplastida
AT5G38344 No alias Toll-Interleukin-Resistance (TIR) domain family protein 0.05 Archaeplastida
AT5G38350 No alias Disease resistance protein (NBS-LRR class) family 0.04 Archaeplastida
AT5G49140 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.04 Archaeplastida
AT5G51630 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.05 Archaeplastida
GSVIVT01001510001 No alias No description available 0.03 Archaeplastida
GSVIVT01019193001 No alias External stimuli response.biotic stress.pathogen... 0.04 Archaeplastida
GSVIVT01020983001 No alias Disease resistance-like protein DSC1 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01022982001 No alias No description available 0.03 Archaeplastida
GSVIVT01022984001 No alias External stimuli response.biotic stress.pathogen... 0.03 Archaeplastida
GSVIVT01036400001 No alias External stimuli response.biotic stress.pathogen... 0.03 Archaeplastida
GSVIVT01038755001 No alias TMV resistance protein N OS=Nicotiana glutinosa 0.03 Archaeplastida
Gb_00097 No alias TMV resistance protein N OS=Nicotiana glutinosa... 0.03 Archaeplastida
Gb_00098 No alias TMV resistance protein N OS=Nicotiana glutinosa... 0.03 Archaeplastida
Gb_04201 No alias effector receptor (NLR) 0.03 Archaeplastida
Gb_11158 No alias effector receptor (NLR) 0.02 Archaeplastida
Gb_12318 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_17905 No alias TMV resistance protein N OS=Nicotiana glutinosa... 0.03 Archaeplastida
Gb_21496 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_33283 No alias Disease resistance protein TAO1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_33284 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_33802 No alias effector receptor (NLR) 0.02 Archaeplastida
Gb_36252 No alias effector receptor (NLR) 0.03 Archaeplastida
Solyc05g007850.2.1 No alias effector receptor (NLR) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0006952 defense response ISS Interproscan
BP GO:0009817 defense response to fungus, incompatible interaction IMP Interproscan
BP GO:0015979 photosynthesis RCA Interproscan
BP GO:2000071 regulation of defense response by callose deposition IMP Interproscan
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Neighborhood
BP GO:0000097 sulfur amino acid biosynthetic process IEP Neighborhood
BP GO:0000165 MAPK cascade IEP Neighborhood
BP GO:0002682 regulation of immune system process IEP Neighborhood
MF GO:0003951 NAD+ kinase activity IEP Neighborhood
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Neighborhood
MF GO:0004124 cysteine synthase activity IEP Neighborhood
MF GO:0004176 ATP-dependent peptidase activity IEP Neighborhood
MF GO:0004331 fructose-2,6-bisphosphate 2-phosphatase activity IEP Neighborhood
MF GO:0004760 serine-pyruvate transaminase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005221 intracellular cyclic nucleotide activated cation channel activity IEP Neighborhood
MF GO:0005222 intracellular cAMP-activated cation channel activity IEP Neighborhood
MF GO:0005242 inward rectifier potassium channel activity IEP Neighborhood
MF GO:0005262 calcium channel activity IEP Neighborhood
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
MF GO:0005375 copper ion transmembrane transporter activity IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
BP GO:0006000 fructose metabolic process IEP Neighborhood
BP GO:0006002 fructose 6-phosphate metabolic process IEP Neighborhood
BP GO:0006003 fructose 2,6-bisphosphate metabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006498 N-terminal protein lipidation IEP Neighborhood
BP GO:0006499 N-terminal protein myristoylation IEP Neighborhood
BP GO:0006534 cysteine metabolic process IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
BP GO:0006833 water transport IEP Neighborhood
BP GO:0006857 oligopeptide transport IEP Neighborhood
BP GO:0006873 cellular ion homeostasis IEP Neighborhood
BP GO:0007263 nitric oxide mediated signal transduction IEP Neighborhood
BP GO:0007602 phototransduction IEP Neighborhood
BP GO:0007623 circadian rhythm IEP Neighborhood
BP GO:0008219 cell death IEP Neighborhood
MF GO:0008453 alanine-glyoxylate transaminase activity IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0009070 serine family amino acid biosynthetic process IEP Neighborhood
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009526 plastid envelope IEP Neighborhood
CC GO:0009534 chloroplast thylakoid IEP Neighborhood
CC GO:0009535 chloroplast thylakoid membrane IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
BP GO:0009581 detection of external stimulus IEP Neighborhood
BP GO:0009582 detection of abiotic stimulus IEP Neighborhood
BP GO:0009583 detection of light stimulus IEP Neighborhood
BP GO:0009585 red, far-red light phototransduction IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009626 plant-type hypersensitive response IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009637 response to blue light IEP Neighborhood
BP GO:0009638 phototropism IEP Neighborhood
BP GO:0009639 response to red or far red light IEP Neighborhood
BP GO:0009657 plastid organization IEP Neighborhood
BP GO:0009658 chloroplast organization IEP Neighborhood
BP GO:0009704 de-etiolation IEP Neighborhood
BP GO:0009785 blue light signaling pathway IEP Neighborhood
BP GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway IEP Neighborhood
BP GO:0009867 jasmonic acid mediated signaling pathway IEP Neighborhood
BP GO:0009870 defense response signaling pathway, resistance gene-dependent IEP Neighborhood
MF GO:0009881 photoreceptor activity IEP Neighborhood
MF GO:0009882 blue light photoreceptor activity IEP Neighborhood
CC GO:0009898 cytoplasmic side of plasma membrane IEP Neighborhood
BP GO:0009902 chloroplast relocation IEP Neighborhood
BP GO:0009903 chloroplast avoidance movement IEP Neighborhood
BP GO:0009904 chloroplast accumulation movement IEP Neighborhood
CC GO:0009941 chloroplast envelope IEP Neighborhood
BP GO:0009965 leaf morphogenesis IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
CC GO:0009986 cell surface IEP Neighborhood
BP GO:0010017 red or far-red light signaling pathway IEP Neighborhood
BP GO:0010100 negative regulation of photomorphogenesis IEP Neighborhood
BP GO:0010114 response to red light IEP Neighborhood
BP GO:0010148 transpiration IEP Neighborhood
BP GO:0010155 regulation of proton transport IEP Neighborhood
BP GO:0010161 red light signaling pathway IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0010310 regulation of hydrogen peroxide metabolic process IEP Neighborhood
BP GO:0010343 singlet oxygen-mediated programmed cell death IEP Neighborhood
BP GO:0010360 negative regulation of anion channel activity IEP Neighborhood
BP GO:0010361 regulation of anion channel activity by blue light IEP Neighborhood
BP GO:0010362 negative regulation of anion channel activity by blue light IEP Neighborhood
BP GO:0010380 regulation of chlorophyll biosynthetic process IEP Neighborhood
BP GO:0010600 regulation of auxin biosynthetic process IEP Neighborhood
BP GO:0010617 circadian regulation of calcium ion oscillation IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0010928 regulation of auxin mediated signaling pathway IEP Neighborhood
BP GO:0012501 programmed cell death IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
MF GO:0015421 oligopeptide-transporting ATPase activity IEP Neighborhood
MF GO:0015440 peptide-transporting ATPase activity IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0015858 nucleoside transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016143 S-glycoside metabolic process IEP Neighborhood
BP GO:0016144 S-glycoside biosynthetic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
BP GO:0017001 antibiotic catabolic process IEP Neighborhood
BP GO:0019220 regulation of phosphate metabolic process IEP Neighborhood
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP Neighborhood
BP GO:0019344 cysteine biosynthetic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0019750 chloroplast localization IEP Neighborhood
BP GO:0019757 glycosinolate metabolic process IEP Neighborhood
BP GO:0019758 glycosinolate biosynthetic process IEP Neighborhood
BP GO:0019760 glucosinolate metabolic process IEP Neighborhood
BP GO:0019761 glucosinolate biosynthetic process IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0023014 signal transduction by protein phosphorylation IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
BP GO:0030003 cellular cation homeostasis IEP Neighborhood
BP GO:0030522 intracellular receptor signaling pathway IEP Neighborhood
BP GO:0031348 negative regulation of defense response IEP Neighborhood
BP GO:0031399 regulation of protein modification process IEP Neighborhood
CC GO:0031897 Tic complex IEP Neighborhood
CC GO:0031976 plastid thylakoid IEP Neighborhood
BP GO:0032268 regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0032350 regulation of hormone metabolic process IEP Neighborhood
BP GO:0032410 negative regulation of transporter activity IEP Neighborhood
BP GO:0032413 negative regulation of ion transmembrane transporter activity IEP Neighborhood
MF GO:0033220 amide-transporting ATPase activity IEP Neighborhood
BP GO:0034050 host programmed cell death induced by symbiont IEP Neighborhood
CC GO:0034357 photosynthetic membrane IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034762 regulation of transmembrane transport IEP Neighborhood
BP GO:0034763 negative regulation of transmembrane transport IEP Neighborhood
BP GO:0034765 regulation of ion transmembrane transport IEP Neighborhood
BP GO:0034766 negative regulation of ion transmembrane transport IEP Neighborhood
BP GO:0035303 regulation of dephosphorylation IEP Neighborhood
BP GO:0035304 regulation of protein dephosphorylation IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
BP GO:0035672 oligopeptide transmembrane transport IEP Neighborhood
MF GO:0035673 oligopeptide transmembrane transporter activity IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0036473 cell death in response to oxidative stress IEP Neighborhood
MF GO:0038023 signaling receptor activity IEP Neighborhood
BP GO:0042044 fluid transport IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
CC GO:0042651 thylakoid membrane IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0042743 hydrogen peroxide metabolic process IEP Neighborhood
BP GO:0042744 hydrogen peroxide catabolic process IEP Neighborhood
BP GO:0042793 plastid transcription IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0042887 amide transmembrane transporter activity IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043269 regulation of ion transport IEP Neighborhood
BP GO:0043271 negative regulation of ion transport IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
BP GO:0043609 regulation of carbon utilization IEP Neighborhood
MF GO:0043855 cyclic nucleotide-gated ion channel activity IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
CC GO:0044434 chloroplast part IEP Neighborhood
CC GO:0044435 plastid part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
BP GO:0044550 secondary metabolite biosynthetic process IEP Neighborhood
BP GO:0045036 protein targeting to chloroplast IEP Neighborhood
BP GO:0045037 protein import into chloroplast stroma IEP Neighborhood
BP GO:0045038 protein import into chloroplast thylakoid membrane IEP Neighborhood
BP GO:0045088 regulation of innate immune response IEP Neighborhood
BP GO:0046490 isopentenyl diphosphate metabolic process IEP Neighborhood
BP GO:0046777 protein autophosphorylation IEP Neighborhood
BP GO:0046885 regulation of hormone biosynthetic process IEP Neighborhood
BP GO:0048511 rhythmic process IEP Neighborhood
BP GO:0048585 negative regulation of response to stimulus IEP Neighborhood
BP GO:0048878 chemical homeostasis IEP Neighborhood
MF GO:0050281 serine-glyoxylate transaminase activity IEP Neighborhood
MF GO:0050308 sugar-phosphatase activity IEP Neighborhood
BP GO:0050776 regulation of immune response IEP Neighborhood
BP GO:0050801 ion homeostasis IEP Neighborhood
BP GO:0051049 regulation of transport IEP Neighborhood
BP GO:0051051 negative regulation of transport IEP Neighborhood
BP GO:0051174 regulation of phosphorus metabolic process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
BP GO:0051193 regulation of cofactor metabolic process IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0051480 regulation of cytosolic calcium ion concentration IEP Neighborhood
BP GO:0051606 detection of stimulus IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051644 plastid localization IEP Neighborhood
BP GO:0051656 establishment of organelle localization IEP Neighborhood
BP GO:0051667 establishment of plastid localization IEP Neighborhood
CC GO:0055035 plastid thylakoid membrane IEP Neighborhood
BP GO:0055080 cation homeostasis IEP Neighborhood
BP GO:0055082 cellular chemical homeostasis IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
MF GO:0060089 molecular transducer activity IEP Neighborhood
BP GO:0065002 intracellular protein transmembrane transport IEP Neighborhood
BP GO:0070838 divalent metal ion transport IEP Neighborhood
BP GO:0071214 cellular response to abiotic stimulus IEP Neighborhood
BP GO:0071478 cellular response to radiation IEP Neighborhood
BP GO:0071482 cellular response to light stimulus IEP Neighborhood
BP GO:0071483 cellular response to blue light IEP Neighborhood
BP GO:0071489 cellular response to red or far red light IEP Neighborhood
BP GO:0071491 cellular response to red light IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0071806 protein transmembrane transport IEP Neighborhood
BP GO:0072511 divalent inorganic cation transport IEP Neighborhood
BP GO:0072596 establishment of protein localization to chloroplast IEP Neighborhood
BP GO:0072598 protein localization to chloroplast IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090056 regulation of chlorophyll metabolic process IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
BP GO:0090342 regulation of cell aging IEP Neighborhood
BP GO:0090354 regulation of auxin metabolic process IEP Neighborhood
BP GO:0097468 programmed cell death in response to reactive oxygen species IEP Neighborhood
CC GO:0098552 side of membrane IEP Neighborhood
CC GO:0098562 cytoplasmic side of membrane IEP Neighborhood
MF GO:0099094 ligand-gated cation channel activity IEP Neighborhood
BP GO:0104004 cellular response to environmental stimulus IEP Neighborhood
BP GO:1901401 regulation of tetrapyrrole metabolic process IEP Neighborhood
BP GO:1901463 regulation of tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
BP GO:1901659 glycosyl compound biosynthetic process IEP Neighborhood
BP GO:1903792 negative regulation of anion transport IEP Neighborhood
BP GO:1903960 negative regulation of anion transmembrane transport IEP Neighborhood
BP GO:1904062 regulation of cation transmembrane transport IEP Neighborhood
MF GO:1904680 peptide transmembrane transporter activity IEP Neighborhood
BP GO:1905392 plant organ morphogenesis IEP Neighborhood
BP GO:2000377 regulation of reactive oxygen species metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR013591 Brevis_radix_dom 537 592
IPR013591 Brevis_radix_dom 434 485
IPR002182 NB-ARC 185 407
IPR000157 TIR_dom 9 183
No external refs found!