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  5. Pp3c13_13090V3.1

Pp3c13_13090V3.1


Description : DEA(D/H)-box RNA helicase family protein


Gene families : OG0006573 (Archaeplastida) Phylogenetic Tree(s): OG0006573_tree ,
OG_05_0006254 (LandPlants) Phylogenetic Tree(s): OG_05_0006254_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c13_13090V3.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00149950 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.04 Archaeplastida
AT3G06980 No alias DEA(D/H)-box RNA helicase family protein 0.16 Archaeplastida
Cre10.g436650 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01017719001 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.11 Archaeplastida
Gb_19265 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.05 Archaeplastida
LOC_Os03g01830.1 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.06 Archaeplastida
MA_10437125g0010 No alias no hits & (original description: none) 0.1 Archaeplastida
Mp8g11020.1 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis... 0.14 Archaeplastida
Smo142751 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.03 Archaeplastida
Smo403724 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.05 Archaeplastida
Solyc11g045180.3.1 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.04 Archaeplastida
Zm00001e039095_P002 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!