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  5. Pp3c13_17270V3.1

Pp3c13_17270V3.1


Description : CRM family member 2


Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0000737 (LandPlants) Phylogenetic Tree(s): OG_05_0000737_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c13_17270V3.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265220 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.09 Archaeplastida
AMTR_s00028p00245370 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.07 Archaeplastida
AMTR_s00045p00114550 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
AMTR_s00079p00107040 evm_27.TU.AmTr_v1... CRM-domain containing factor CFM3,... 0.1 Archaeplastida
AMTR_s00079p00185530 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AT3G01370 ATCFM2, CFM2 CRM family member 2 0.2 Archaeplastida
AT3G18390 EMB1865 CRS1 / YhbY (CRM) domain-containing protein 0.18 Archaeplastida
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.19 Archaeplastida
AT4G14510 ATCFM3B, CFM3B CRM family member 3B 0.03 Archaeplastida
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.12 Archaeplastida
AT5G16180 ATCRS1, CRS1 ortholog of maize chloroplast splicing factor CRS1 0.03 Archaeplastida
Cre14.g630301 No alias No description available 0.02 Archaeplastida
GSVIVT01008296001 No alias CRM-domain containing factor CFM3,... 0.13 Archaeplastida
GSVIVT01015193001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01018109001 No alias RNA processing.organelle machineries.RNA... 0.08 Archaeplastida
GSVIVT01031001001 No alias RNA processing.organelle machineries.RNA... 0.08 Archaeplastida
GSVIVT01032542001 No alias RNA processing.organelle machineries.RNA... 0.09 Archaeplastida
Gb_18301 No alias CRM-domain containing factor CFM2, chloroplastic... 0.06 Archaeplastida
Gb_18302 No alias CRM-domain containing factor CFM2, chloroplastic... 0.05 Archaeplastida
Gb_18303 No alias CRM-domain containing factor CFM2, chloroplastic... 0.13 Archaeplastida
Gb_37638 No alias CFM2-type plastidial RNA splicing factor. CFM3-type... 0.1 Archaeplastida
Gb_39217 No alias CFM2-type plastidial RNA splicing factor 0.08 Archaeplastida
LOC_Os04g39060.2 No alias CRM-domain containing factor CFM2, chloroplastic... 0.09 Archaeplastida
LOC_Os05g47850.1 No alias CRM-domain containing factor CFM3,... 0.1 Archaeplastida
LOC_Os08g27150.1 No alias CRS1 plastidial RNA splicing factor 0.03 Archaeplastida
LOC_Os09g19850.1 No alias CRM-domain containing factor CFM3,... 0.07 Archaeplastida
LOC_Os11g37990.1 No alias CFM3-type plastidial RNA splicing factor 0.06 Archaeplastida
MA_10233916g0010 No alias CRM-domain containing factor CFM2, chloroplastic... 0.03 Archaeplastida
MA_10432072g0010 No alias CFM2-type plastidial RNA splicing factor 0.08 Archaeplastida
MA_10435740g0010 No alias CFM2-type plastidial RNA splicing factor 0.1 Archaeplastida
MA_130902g0010 No alias CRM-domain containing factor CFM2, chloroplastic... 0.05 Archaeplastida
MA_8161870g0010 No alias CRM-domain containing factor CFM2, chloroplastic... 0.04 Archaeplastida
Mp3g06280.1 No alias CRM-domain containing factor CFM3,... 0.1 Archaeplastida
Smo120007 No alias CRM-domain containing factor CFM3,... 0.06 Archaeplastida
Smo20706 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
Smo412905 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
Solyc03g119450.3.1 No alias CRM-domain containing factor CFM3,... 0.15 Archaeplastida
Solyc07g039500.4.1 No alias CRM-domain containing factor CFM3,... 0.16 Archaeplastida
Solyc09g083350.3.1 No alias CFM3-type plastidial RNA splicing factor 0.12 Archaeplastida
Zm00001e004284_P002 No alias CRS1 plastidial RNA splicing factor 0.03 Archaeplastida
Zm00001e011272_P001 No alias CFM3-type plastidial RNA splicing factor 0.03 Archaeplastida
Zm00001e032339_P002 No alias CRM-domain containing factor CFM3,... 0.13 Archaeplastida
Zm00001e033939_P001 No alias CRM-domain containing factor CFM3,... 0.1 Archaeplastida
Zm00001e041033_P001 No alias CFM2-type plastidial RNA splicing factor 0.06 Archaeplastida
Zm00001e041034_P001 No alias CFM2-type plastidial RNA splicing factor 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!