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Aliases : CKB2
Description : casein kinase II beta chain 2
Gene families : OG0001556 (Archaeplastida) Phylogenetic Tree(s): OG0001556_tree ,
OG_05_0001360 (LandPlants) Phylogenetic Tree(s): OG_05_0001360_tree ,
OG_06_0001194 (SeedPlants) Phylogenetic Tree(s): OG_06_0001194_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT4G17640 | |
| Cluster | HCCA: Cluster_221 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Pp3c16_12520V3.1 | No alias | casein kinase II beta chain 1 | 0.02 | Archaeplastida | |
| Pp3c5_14940V3.1 | No alias | casein kinase II beta chain 1 | 0.02 | Archaeplastida | |
| Solyc01g088740.4.1 | No alias | regulatory subunit beta of CK-II kinase | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005634 | nucleus | ISM | Interproscan |
| CC | GO:0005956 | protein kinase CK2 complex | ISS | Interproscan |
| BP | GO:0006468 | protein phosphorylation | ISS | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
| CC | GO:0000795 | synaptonemal complex | IEP | Neighborhood |
| MF | GO:0001085 | RNA polymerase II transcription factor binding | IEP | Neighborhood |
| MF | GO:0001091 | RNA polymerase II basal transcription factor binding | IEP | Neighborhood |
| MF | GO:0001093 | TFIIB-class transcription factor binding | IEP | Neighborhood |
| MF | GO:0001098 | basal transcription machinery binding | IEP | Neighborhood |
| MF | GO:0001099 | basal RNA polymerase II transcription machinery binding | IEP | Neighborhood |
| BP | GO:0002240 | response to molecule of oomycetes origin | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| CC | GO:0005737 | cytoplasm | IEP | Neighborhood |
| CC | GO:0005759 | mitochondrial matrix | IEP | Neighborhood |
| CC | GO:0005769 | early endosome | IEP | Neighborhood |
| BP | GO:0006302 | double-strand break repair | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006486 | protein glycosylation | IEP | Neighborhood |
| BP | GO:0006897 | endocytosis | IEP | Neighborhood |
| MF | GO:0008134 | transcription factor binding | IEP | Neighborhood |
| BP | GO:0009314 | response to radiation | IEP | Neighborhood |
| BP | GO:0009636 | response to toxic substance | IEP | Neighborhood |
| BP | GO:0009644 | response to high light intensity | IEP | Neighborhood |
| BP | GO:0009756 | carbohydrate mediated signaling | IEP | Neighborhood |
| BP | GO:0010165 | response to X-ray | IEP | Neighborhood |
| BP | GO:0010182 | sugar mediated signaling pathway | IEP | Neighborhood |
| BP | GO:0010212 | response to ionizing radiation | IEP | Neighborhood |
| BP | GO:0016192 | vesicle-mediated transport | IEP | Neighborhood |
| BP | GO:0016567 | protein ubiquitination | IEP | Neighborhood |
| BP | GO:0018022 | peptidyl-lysine methylation | IEP | Neighborhood |
| CC | GO:0030117 | membrane coat | IEP | Neighborhood |
| CC | GO:0030118 | clathrin coat | IEP | Neighborhood |
| CC | GO:0030120 | vesicle coat | IEP | Neighborhood |
| CC | GO:0030125 | clathrin vesicle coat | IEP | Neighborhood |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | Neighborhood |
| BP | GO:0034968 | histone lysine methylation | IEP | Neighborhood |
| BP | GO:0042542 | response to hydrogen peroxide | IEP | Neighborhood |
| BP | GO:0042753 | positive regulation of circadian rhythm | IEP | Neighborhood |
| BP | GO:0043413 | macromolecule glycosylation | IEP | Neighborhood |
| MF | GO:0046982 | protein heterodimerization activity | IEP | Neighborhood |
| MF | GO:0046983 | protein dimerization activity | IEP | Neighborhood |
| BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
| BP | GO:0051568 | histone H3-K4 methylation | IEP | Neighborhood |
| MF | GO:0070063 | RNA polymerase binding | IEP | Neighborhood |
| BP | GO:0070085 | glycosylation | IEP | Neighborhood |
| BP | GO:0080050 | regulation of seed development | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| BP | GO:0098657 | import into cell | IEP | Neighborhood |
| CC | GO:0099086 | synaptonemal structure | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| BP | GO:2000034 | regulation of seed maturation | IEP | Neighborhood |
| BP | GO:2000693 | positive regulation of seed maturation | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000704 | Casein_kinase_II_reg-sub | 95 | 278 |
| No external refs found! |