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  5. Pp3c13_8060V3.1

Pp3c13_8060V3.1


Description : SNF7 family protein


Gene families : OG0001089 (Archaeplastida) Phylogenetic Tree(s): OG0001089_tree ,
OG_05_0004324 (LandPlants) Phylogenetic Tree(s): OG_05_0004324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c13_8060V3.1
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01028365001 No alias Vesicle trafficking.endomembrane trafficking.ESCRT... 0.04 Archaeplastida
LOC_Os07g13270.1 No alias component VPS2/CHMP2 of ESCRT-III complex 0.03 Archaeplastida
MA_96110g0010 No alias component VPS2/CHMP2 of ESCRT-III complex 0.02 Archaeplastida
Pp3c13_6090V3.1 No alias vacuolar protein sorting-associated protein 2.3 0.02 Archaeplastida
Solyc12g009060.2.1 No alias component VPS2/CHMP2 of ESCRT-III complex 0.02 Archaeplastida
Zm00001e009370_P001 No alias component VPS2/CHMP2 of ESCRT-III complex 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0097526 spliceosomal tri-snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!