AT4G18030

Description : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Gene families : OG0000696 (Archaeplastida) Phylogenetic Tree(s): OG0000696_tree ,
OG_05_0003292 (LandPlants) Phylogenetic Tree(s): OG_05_0003292_tree ,
OG_06_0002138 (SeedPlants) Phylogenetic Tree(s): OG_06_0002138_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G18030
Cluster	HCCA: Cluster_235

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01013233001	No alias	Probable methyltransferase PMT14 OS=Arabidopsis thaliana	0.1	Archaeplastida
GSVIVT01013577001	No alias	Probable methyltransferase PMT19 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01019997001	No alias	Probable methyltransferase PMT2 OS=Arabidopsis thaliana	0.09	Archaeplastida
GSVIVT01027513001	No alias	Probable methyltransferase PMT15 OS=Arabidopsis thaliana	0.03	Archaeplastida
LOC_Os02g45310.1	No alias	Probable methyltransferase PMT15 OS=Arabidopsis thaliana...	0.05	Archaeplastida
LOC_Os04g48230.1	No alias	Probable methyltransferase PMT15 OS=Arabidopsis thaliana...	0.05	Archaeplastida
LOC_Os09g24900.1	No alias	Probable methyltransferase PMT2 OS=Arabidopsis thaliana...	0.05	Archaeplastida
LOC_Os10g36690.4	No alias	Probable methyltransferase PMT18 OS=Arabidopsis thaliana...	0.06	Archaeplastida
MA_10430815g0020	No alias	Probable methyltransferase PMT17 OS=Arabidopsis thaliana...	0.08	Archaeplastida
MA_9138363g0010	No alias	no hits & (original description: none)	0.06	Archaeplastida
MA_9992039g0010	No alias	Probable methyltransferase PMT17 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Pp3c1_20010V3.1	No alias	S-adenosyl-L-methionine-dependent methyltransferases...	0.07	Archaeplastida
Solyc05g007490.3.1	No alias	Probable methyltransferase PMT2 OS=Arabidopsis thaliana...	0.06	Archaeplastida
Solyc06g069870.3.1	No alias	Probable methyltransferase PMT2 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc08g013740.4.1	No alias	Probable methyltransferase PMT18 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc08g077240.3.1	No alias	Probable methyltransferase PMT14 OS=Arabidopsis thaliana...	0.07	Archaeplastida
Zm00001e004383_P001	No alias	Probable methyltransferase PMT18 OS=Arabidopsis thaliana...	0.1	Archaeplastida
Zm00001e023221_P002	No alias	Probable methyltransferase PMT15 OS=Arabidopsis thaliana...	0.05	Archaeplastida
Zm00001e034120_P001	No alias	Probable methyltransferase PMT2 OS=Arabidopsis thaliana...	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	None	Extended
CC	GO:0005768	endosome	IDA	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
CC	GO:0005802	trans-Golgi network	IDA	Interproscan
BP	GO:0006081	cellular aldehyde metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0008654	phospholipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	None	Extended
CC	GO:0009505	plant-type cell wall	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	RCA	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031982	vesicle	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0042546	cell wall biogenesis	RCA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044431	Golgi apparatus part	None	Extended
CC	GO:0044437	vacuolar part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046490	isopentenyl diphosphate metabolic process	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098791	Golgi subcompartment	None	Extended
CC	GO:0098805	whole membrane	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Neighborhood
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	Neighborhood
CC	GO:0000139	Golgi membrane	IEP	Neighborhood
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0000226	microtubule cytoskeleton organization	IEP	Neighborhood
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Neighborhood
BP	GO:0000902	cell morphogenesis	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004560	alpha-L-fucosidase activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	Neighborhood
MF	GO:0005200	structural constituent of cytoskeleton	IEP	Neighborhood
MF	GO:0005516	calmodulin binding	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005773	vacuole	IEP	Neighborhood
CC	GO:0005881	cytoplasmic microtubule	IEP	Neighborhood
CC	GO:0005886	plasma membrane	IEP	Neighborhood
CC	GO:0005911	cell-cell junction	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006073	cellular glucan metabolic process	IEP	Neighborhood
BP	GO:0006084	acetyl-CoA metabolic process	IEP	Neighborhood
BP	GO:0006163	purine nucleotide metabolic process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006534	cysteine metabolic process	IEP	Neighborhood
BP	GO:0006555	methionine metabolic process	IEP	Neighborhood
BP	GO:0006637	acyl-CoA metabolic process	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006790	sulfur compound metabolic process	IEP	Neighborhood
BP	GO:0007010	cytoskeleton organization	IEP	Neighborhood
BP	GO:0007017	microtubule-based process	IEP	Neighborhood
BP	GO:0007020	microtubule nucleation	IEP	Neighborhood
BP	GO:0007155	cell adhesion	IEP	Neighborhood
BP	GO:0007166	cell surface receptor signaling pathway	IEP	Neighborhood
BP	GO:0007167	enzyme linked receptor protein signaling pathway	IEP	Neighborhood
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	Neighborhood
BP	GO:0007584	response to nutrient	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
BP	GO:0008361	regulation of cell size	IEP	Neighborhood
MF	GO:0008378	galactosyltransferase activity	IEP	Neighborhood
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009086	methionine biosynthetic process	IEP	Neighborhood
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009259	ribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009314	response to radiation	IEP	Neighborhood
BP	GO:0009411	response to UV	IEP	Neighborhood
BP	GO:0009416	response to light stimulus	IEP	Neighborhood
CC	GO:0009506	plasmodesma	IEP	Neighborhood
BP	GO:0009605	response to external stimulus	IEP	Neighborhood
BP	GO:0009628	response to abiotic stimulus	IEP	Neighborhood
BP	GO:0009653	anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0009664	plant-type cell wall organization	IEP	Neighborhood
BP	GO:0009825	multidimensional cell growth	IEP	Neighborhood
BP	GO:0009826	unidimensional cell growth	IEP	Neighborhood
BP	GO:0009832	plant-type cell wall biogenesis	IEP	Neighborhood
BP	GO:0009833	plant-type primary cell wall biogenesis	IEP	Neighborhood
BP	GO:0009914	hormone transport	IEP	Neighborhood
BP	GO:0009926	auxin polar transport	IEP	Neighborhood
BP	GO:0009932	cell tip growth	IEP	Neighborhood
BP	GO:0009969	xyloglucan biosynthetic process	IEP	Neighborhood
CC	GO:0010005	cortical microtubule, transverse to long axis	IEP	Neighborhood
MF	GO:0010011	auxin binding	IEP	Neighborhood
BP	GO:0010015	root morphogenesis	IEP	Neighborhood
BP	GO:0010075	regulation of meristem growth	IEP	Neighborhood
BP	GO:0010152	pollen maturation	IEP	Neighborhood
BP	GO:0010215	cellulose microfibril organization	IEP	Neighborhood
CC	GO:0010330	cellulose synthase complex	IEP	Neighborhood
BP	GO:0010410	hemicellulose metabolic process	IEP	Neighborhood
BP	GO:0010411	xyloglucan metabolic process	IEP	Neighborhood
BP	GO:0010583	response to cyclopentenone	IEP	Neighborhood
BP	GO:0010639	negative regulation of organelle organization	IEP	Neighborhood
BP	GO:0010817	regulation of hormone levels	IEP	Neighborhood
BP	GO:0014070	response to organic cyclic compound	IEP	Neighborhood
MF	GO:0015928	fucosidase activity	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0016049	cell growth	IEP	Neighborhood
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0016125	sterol metabolic process	IEP	Neighborhood
BP	GO:0016126	sterol biosynthetic process	IEP	Neighborhood
BP	GO:0016128	phytosteroid metabolic process	IEP	Neighborhood
BP	GO:0016129	phytosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0016131	brassinosteroid metabolic process	IEP	Neighborhood
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016759	cellulose synthase activity	IEP	Neighborhood
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	Neighborhood
MF	GO:0016871	cycloartenol synthase activity	IEP	Neighborhood
BP	GO:0019344	cysteine biosynthetic process	IEP	Neighborhood
BP	GO:0021700	developmental maturation	IEP	Neighborhood
BP	GO:0022610	biological adhesion	IEP	Neighborhood
BP	GO:0030036	actin cytoskeleton organization	IEP	Neighborhood
CC	GO:0030054	cell junction	IEP	Neighborhood
BP	GO:0030198	extracellular matrix organization	IEP	Neighborhood
BP	GO:0030243	cellulose metabolic process	IEP	Neighborhood
MF	GO:0030570	pectate lyase activity	IEP	Neighborhood
BP	GO:0030834	regulation of actin filament depolymerization	IEP	Neighborhood
BP	GO:0030835	negative regulation of actin filament depolymerization	IEP	Neighborhood
BP	GO:0030837	negative regulation of actin filament polymerization	IEP	Neighborhood
BP	GO:0030865	cortical cytoskeleton organization	IEP	Neighborhood
BP	GO:0031122	cytoplasmic microtubule organization	IEP	Neighborhood
BP	GO:0031333	negative regulation of protein complex assembly	IEP	Neighborhood
MF	GO:0031559	oxidosqualene cyclase activity	IEP	Neighborhood
BP	GO:0031670	cellular response to nutrient	IEP	Neighborhood
BP	GO:0032272	negative regulation of protein polymerization	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
BP	GO:0032535	regulation of cellular component size	IEP	Neighborhood
BP	GO:0032989	cellular component morphogenesis	IEP	Neighborhood
MF	GO:0033843	xyloglucan 6-xylosyltransferase activity	IEP	Neighborhood
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Neighborhood
MF	GO:0035252	UDP-xylosyltransferase activity	IEP	Neighborhood
BP	GO:0035383	thioester metabolic process	IEP	Neighborhood
BP	GO:0040007	growth	IEP	Neighborhood
BP	GO:0040008	regulation of growth	IEP	Neighborhood
MF	GO:0042285	xylosyltransferase activity	IEP	Neighborhood
MF	GO:0042562	hormone binding	IEP	Neighborhood
BP	GO:0043062	extracellular structure organization	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
CC	GO:0043224	nuclear SCF ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0043242	negative regulation of protein complex disassembly	IEP	Neighborhood
BP	GO:0043244	regulation of protein complex disassembly	IEP	Neighborhood
BP	GO:0043473	pigmentation	IEP	Neighborhood
BP	GO:0043476	pigment accumulation	IEP	Neighborhood
BP	GO:0043478	pigment accumulation in response to UV light	IEP	Neighborhood
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0043480	pigment accumulation in tissues	IEP	Neighborhood
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0043622	cortical microtubule organization	IEP	Neighborhood
BP	GO:0044042	glucan metabolic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Neighborhood
CC	GO:0044430	cytoskeletal part	IEP	Neighborhood
BP	GO:0045013	carbon catabolite repression of transcription	IEP	Neighborhood
BP	GO:0045014	carbon catabolite repression of transcription by glucose	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
CC	GO:0045298	tubulin complex	IEP	Neighborhood
BP	GO:0045489	pectin biosynthetic process	IEP	Neighborhood
BP	GO:0045990	carbon catabolite regulation of transcription	IEP	Neighborhood
BP	GO:0046015	regulation of transcription by glucose	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
MF	GO:0047262	polygalacturonate 4-alpha-galacturonosyltransferase activity	IEP	Neighborhood
MF	GO:0047513	1,2-alpha-L-fucosidase activity	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood
BP	GO:0048509	regulation of meristem development	IEP	Neighborhood
MF	GO:0048531	beta-1,3-galactosyltransferase activity	IEP	Neighborhood
BP	GO:0048588	developmental cell growth	IEP	Neighborhood
BP	GO:0048589	developmental growth	IEP	Neighborhood
BP	GO:0048638	regulation of developmental growth	IEP	Neighborhood
BP	GO:0048767	root hair elongation	IEP	Neighborhood
BP	GO:0048869	cellular developmental process	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
MF	GO:0051015	actin filament binding	IEP	Neighborhood
BP	GO:0051016	barbed-end actin filament capping	IEP	Neighborhood
BP	GO:0051129	negative regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051273	beta-glucan metabolic process	IEP	Neighborhood
BP	GO:0051494	negative regulation of cytoskeleton organization	IEP	Neighborhood
BP	GO:0051693	actin filament capping	IEP	Neighborhood
CC	GO:0055028	cortical microtubule	IEP	Neighborhood
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	Neighborhood
BP	GO:0060918	auxin transport	IEP	Neighborhood
BP	GO:0061984	catabolite repression	IEP	Neighborhood
BP	GO:0061985	carbon catabolite repression	IEP	Neighborhood
BP	GO:0061986	negative regulation of transcription by glucose	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
BP	GO:0071258	cellular response to gravity	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0072521	purine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0090066	regulation of anatomical structure size	IEP	Neighborhood
BP	GO:0097435	supramolecular fiber organization	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Neighborhood
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Neighborhood
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Neighborhood
BP	GO:1901879	regulation of protein depolymerization	IEP	Neighborhood
BP	GO:1901880	negative regulation of protein depolymerization	IEP	Neighborhood
BP	GO:1902904	negative regulation of supramolecular fiber organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004159	Put_SAM_MeTrfase	94	600

External Links

No external refs found!

AT4G18030

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation