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  5. Pp3c14_22330V3.1

Pp3c14_22330V3.1


Description : RNApolymerase sigma subunit 2


Gene families : OG0000365 (Archaeplastida) Phylogenetic Tree(s): OG0000365_tree ,
OG_05_0001853 (LandPlants) Phylogenetic Tree(s): OG_05_0001853_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c14_22330V3.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00072720 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 Archaeplastida
AMTR_s00011p00258380 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.02 Archaeplastida
AMTR_s00011p00266100 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 Archaeplastida
AMTR_s00015p00252960 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.02 Archaeplastida
AT1G08540 ATSIG1, SIGB,... RNApolymerase sigma subunit 2 0.04 Archaeplastida
AT1G64860 SIGB, SIG2,... sigma factor A 0.03 Archaeplastida
AT2G36990 SIGF, SIG6,... RNApolymerase sigma-subunit F 0.06 Archaeplastida
Cpa|evm.model.tig00000842.1 No alias RNA biosynthesis.organelle... 0.02 Archaeplastida
Cre03.g194950 No alias RNA biosynthesis.organelle... 0.02 Archaeplastida
GSVIVT01019326001 No alias RNA biosynthesis.organelle... 0.07 Archaeplastida
GSVIVT01024261001 No alias RNA biosynthesis.organelle... 0.05 Archaeplastida
GSVIVT01025717001 No alias RNA biosynthesis.organelle... 0.07 Archaeplastida
GSVIVT01035330001 No alias RNA biosynthesis.organelle... 0.04 Archaeplastida
Gb_03878 No alias basal transcription factor (Sigma) 0.05 Archaeplastida
Gb_05479 No alias basal transcription factor (Sigma) 0.02 Archaeplastida
Gb_37602 No alias basal transcription factor (Sigma) 0.03 Archaeplastida
LOC_Os08g06630.1 No alias basal transcription factor (Sigma) 0.03 Archaeplastida
LOC_Os08g14450.1 No alias basal transcription factor (Sigma) 0.05 Archaeplastida
LOC_Os11g26160.1 No alias basal transcription factor (Sigma) 0.03 Archaeplastida
MA_10362938g0010 No alias basal transcription factor (Sigma) 0.03 Archaeplastida
Mp4g13380.1 No alias basal transcription factor (Sigma) 0.04 Archaeplastida
Pp3c14_4440V3.1 No alias sigma factor A 0.02 Archaeplastida
Smo147096 No alias RNA biosynthesis.organelle... 0.02 Archaeplastida
Solyc01g081490.3.1 No alias basal transcription factor (Sigma) 0.04 Archaeplastida
Solyc09g008040.3.1 No alias basal transcription factor (Sigma) 0.03 Archaeplastida
Zm00001e001198_P005 No alias basal transcription factor (Sigma) 0.05 Archaeplastida
Zm00001e021420_P001 No alias basal transcription factor (Sigma) 0.04 Archaeplastida
Zm00001e032596_P002 No alias basal transcription factor (Sigma) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!