Description : RNApolymerase sigma subunit 2
Gene families : OG0000365 (Archaeplastida) Phylogenetic Tree(s): OG0000365_tree ,
OG_05_0001853 (LandPlants) Phylogenetic Tree(s): OG_05_0001853_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Pp3c14_22330V3.1 | |
Cluster | HCCA: Cluster_20 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00009p00072720 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle... | 0.03 | Archaeplastida | |
AMTR_s00011p00258380 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle... | 0.02 | Archaeplastida | |
AMTR_s00011p00266100 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle... | 0.03 | Archaeplastida | |
AMTR_s00015p00252960 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle... | 0.02 | Archaeplastida | |
AT1G08540 | ATSIG1, SIGB,... | RNApolymerase sigma subunit 2 | 0.04 | Archaeplastida | |
AT1G64860 | SIGB, SIG2,... | sigma factor A | 0.03 | Archaeplastida | |
AT2G36990 | SIGF, SIG6,... | RNApolymerase sigma-subunit F | 0.06 | Archaeplastida | |
Cpa|evm.model.tig00000842.1 | No alias | RNA biosynthesis.organelle... | 0.02 | Archaeplastida | |
Cre03.g194950 | No alias | RNA biosynthesis.organelle... | 0.02 | Archaeplastida | |
GSVIVT01019326001 | No alias | RNA biosynthesis.organelle... | 0.07 | Archaeplastida | |
GSVIVT01024261001 | No alias | RNA biosynthesis.organelle... | 0.05 | Archaeplastida | |
GSVIVT01025717001 | No alias | RNA biosynthesis.organelle... | 0.07 | Archaeplastida | |
GSVIVT01035330001 | No alias | RNA biosynthesis.organelle... | 0.04 | Archaeplastida | |
Gb_03878 | No alias | basal transcription factor (Sigma) | 0.05 | Archaeplastida | |
Gb_05479 | No alias | basal transcription factor (Sigma) | 0.02 | Archaeplastida | |
Gb_37602 | No alias | basal transcription factor (Sigma) | 0.03 | Archaeplastida | |
LOC_Os08g06630.1 | No alias | basal transcription factor (Sigma) | 0.03 | Archaeplastida | |
LOC_Os08g14450.1 | No alias | basal transcription factor (Sigma) | 0.05 | Archaeplastida | |
LOC_Os11g26160.1 | No alias | basal transcription factor (Sigma) | 0.03 | Archaeplastida | |
MA_10362938g0010 | No alias | basal transcription factor (Sigma) | 0.03 | Archaeplastida | |
Mp4g13380.1 | No alias | basal transcription factor (Sigma) | 0.04 | Archaeplastida | |
Pp3c14_4440V3.1 | No alias | sigma factor A | 0.02 | Archaeplastida | |
Smo147096 | No alias | RNA biosynthesis.organelle... | 0.02 | Archaeplastida | |
Solyc01g081490.3.1 | No alias | basal transcription factor (Sigma) | 0.04 | Archaeplastida | |
Solyc09g008040.3.1 | No alias | basal transcription factor (Sigma) | 0.03 | Archaeplastida | |
Zm00001e001198_P005 | No alias | basal transcription factor (Sigma) | 0.05 | Archaeplastida | |
Zm00001e021420_P001 | No alias | basal transcription factor (Sigma) | 0.04 | Archaeplastida | |
Zm00001e032596_P002 | No alias | basal transcription factor (Sigma) | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0004386 | helicase activity | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
MF | GO:0005524 | ATP binding | IEP | Neighborhood |
CC | GO:0005634 | nucleus | IEP | Neighborhood |
MF | GO:0008144 | drug binding | IEP | Neighborhood |
MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
MF | GO:0016462 | pyrophosphatase activity | IEP | Neighborhood |
MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Neighborhood |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Neighborhood |
MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Neighborhood |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
MF | GO:0043167 | ion binding | IEP | Neighborhood |
MF | GO:0043168 | anion binding | IEP | Neighborhood |
MF | GO:0043169 | cation binding | IEP | Neighborhood |
CC | GO:0043226 | organelle | IEP | Neighborhood |
CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
No InterPro domains available for this sequence
No external refs found! |