AT4G18800 (ATHSGBP, RABA1d,...)

Aliases : ATHSGBP, RABA1d, ATRABA1D, ATRAB11B

Description : RAB GTPase homolog A1D

Gene families : OG0000173 (Archaeplastida) Phylogenetic Tree(s): OG0000173_tree ,
OG_05_0000161 (LandPlants) Phylogenetic Tree(s): OG_05_0000161_tree ,
OG_06_0000127 (SeedPlants) Phylogenetic Tree(s): OG_06_0000127_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G18800
Cluster	HCCA: Cluster_240

Target	Alias	Description	ECC score	Gene Family Method
AT3G12160	RABA4D, ATRABA4D	RAB GTPase homolog A4D	0.01	Archaeplastida
LOC_Os03g60870.1	No alias	A-class RAB GTPase	0.02	Archaeplastida
LOC_Os05g48980.1	No alias	A-class RAB GTPase	0.06	Archaeplastida
Solyc04g012180.4.1	No alias	A-class RAB GTPase	0.02	Archaeplastida
Zm00001e011737_P001	No alias	A-class RAB GTPase	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	None	Extended
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
CC	GO:0010008	endosome membrane	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016192	vesicle-mediated transport	RCA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
CC	GO:0030054	cell junction	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031901	early endosome membrane	IDA	Interproscan
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
CC	GO:0032588	trans-Golgi network membrane	IDA	Interproscan
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044431	Golgi apparatus part	None	Extended
CC	GO:0044433	cytoplasmic vesicle part	None	Extended
CC	GO:0044440	endosomal part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098805	whole membrane	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IEP	Neighborhood
CC	GO:0005773	vacuole	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
BP	GO:0010038	response to metal ion	IEP	Neighborhood
BP	GO:0010498	proteasomal protein catabolic process	IEP	Neighborhood
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0030163	protein catabolic process	IEP	Neighborhood
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Neighborhood
BP	GO:0035966	response to topologically incorrect protein	IEP	Neighborhood
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0043248	proteasome assembly	IEP	Neighborhood
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Neighborhood
BP	GO:0043933	protein-containing complex subunit organization	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
BP	GO:0046686	response to cadmium ion	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:0051788	response to misfolded protein	IEP	Neighborhood
BP	GO:0065003	protein-containing complex assembly	IEP	Neighborhood
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1905368	peptidase complex	IEP	Neighborhood
CC	GO:1905369	endopeptidase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	15	175

External Links

No external refs found!

AT4G18800 (ATHSGBP, RABA1d,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation