Pp3c14_6810V3.1


Description : hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases


Gene families : OG0005027 (Archaeplastida) Phylogenetic Tree(s): OG0005027_tree ,
OG_05_0007229 (LandPlants) Phylogenetic Tree(s): OG_05_0007229_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c14_6810V3.1
Cluster HCCA: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00257250 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa... 0.03 Archaeplastida
AT1G77030 No alias hydrolases, acting on acid anhydrides, in... 0.07 Archaeplastida
Cre12.g513701 No alias DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa... 0.05 Archaeplastida
GSVIVT01009983001 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.05 Archaeplastida
Mp7g18590.1 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.02 Archaeplastida
Smo165331 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.02 Archaeplastida
Smo438217 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.02 Archaeplastida
Solyc10g009070.3.1 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.05 Archaeplastida
Zm00001e022381_P001 No alias DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003724 RNA helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 276 386
IPR011545 DEAD/DEAH_box_helicase_dom 72 236
IPR012541 DBP10_C 665 726
No external refs found!