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  5. Pp3c14_8280V3.1

Pp3c14_8280V3.1


Description : Coatomer, beta\ subunit


Gene families : OG0002594 (Archaeplastida) Phylogenetic Tree(s): OG0002594_tree ,
OG_05_0002769 (LandPlants) Phylogenetic Tree(s): OG_05_0002769_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c14_8280V3.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00142p00013680 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.09 Archaeplastida
AT1G79990 No alias structural molecules 0.09 Archaeplastida
AT3G15980 No alias Coatomer, beta' subunit 0.07 Archaeplastida
Cpa|evm.model.tig00020903.33 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 Archaeplastida
Cre02.g118500 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.06 Archaeplastida
GSVIVT01015415001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 Archaeplastida
GSVIVT01017121001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.07 Archaeplastida
Gb_26317 No alias subunit beta2 of coat protein complex 0.06 Archaeplastida
LOC_Os02g11830.2 No alias subunit beta2 of coat protein complex 0.04 Archaeplastida
LOC_Os02g11840.1 No alias subunit beta2 of coat protein complex 0.08 Archaeplastida
MA_10436968g0010 No alias peroxisomal polyamine oxidase (PAO2/3/4). subunit beta2... 0.05 Archaeplastida
Mp3g04060.1 No alias subunit beta2 of coat protein complex 0.06 Archaeplastida
Solyc03g120270.4.1 No alias subunit beta2 of coat protein complex 0.1 Archaeplastida
Solyc06g066730.3.1 No alias subunit beta2 of coat protein complex 0.05 Archaeplastida
Solyc12g043000.3.1 No alias subunit beta2 of coat protein complex 0.09 Archaeplastida
Zm00001e014494_P001 No alias subunit beta2 of coat protein complex 0.13 Archaeplastida
Zm00001e024969_P001 No alias subunit beta2 of coat protein complex 0.11 Archaeplastida
Zm00001e030001_P002 No alias subunit beta2 of coat protein complex 0.12 Archaeplastida
Zm00001e036524_P002 No alias subunit beta2 of coat protein complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005319 lipid transporter activity IEP Neighborhood
MF GO:0005548 phospholipid transporter activity IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015748 organophosphate ester transport IEP Neighborhood
BP GO:0015914 phospholipid transport IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0032271 regulation of protein polymerization IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0044087 regulation of cellular component biogenesis IEP Neighborhood
MF GO:0048365 Rac GTPase binding IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051493 regulation of cytoskeleton organization IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
BP GO:1902903 regulation of supramolecular fiber organization IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 252 287
IPR001680 WD40_repeat 165 202
IPR001680 WD40_repeat 90 116
IPR001680 WD40_repeat 208 246
IPR001680 WD40_repeat 122 158
IPR006692 Coatomer_WD-assoc_reg 350 794
No external refs found!