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  5. AT4G18980

AT4G18980 (AtS40-3)


Aliases : AtS40-3

Description : AtS40-3


Gene families : OG0000280 (Archaeplastida) Phylogenetic Tree(s): OG0000280_tree ,
OG_05_0000173 (LandPlants) Phylogenetic Tree(s): OG_05_0000173_tree ,
OG_06_0000123 (SeedPlants) Phylogenetic Tree(s): OG_06_0000123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G18980
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AT5G03230 No alias Protein of unknown function, DUF584 0.02 Archaeplastida
GSVIVT01004631001 No alias No description available 0.03 Archaeplastida
GSVIVT01037661001 No alias No description available 0.02 Archaeplastida
Gb_36660 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os01g52730.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os01g52740.1 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os04g33760.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os04g43990.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os07g33270.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os10g27350.1 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10434437g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_118009g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_158445g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_2588g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_5080831g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_54260g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_63850g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc09g007790.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc10g006275.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc11g069450.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e019921_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e027469_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e035102_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e041345_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0010150 leaf senescence IMP Interproscan
BP GO:0010468 regulation of gene expression IEP Interproscan
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Type GO Term Name Evidence Source
MF GO:0000014 single-stranded DNA endodeoxyribonuclease activity IEP Neighborhood
MF GO:0000064 L-ornithine transmembrane transporter activity IEP Neighborhood
MF GO:0000257 nitrilase activity IEP Neighborhood
BP GO:0000738 DNA catabolic process, exonucleolytic IEP Neighborhood
BP GO:0001101 response to acid chemical IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003995 acyl-CoA dehydrogenase activity IEP Neighborhood
MF GO:0004096 catalase activity IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004520 endodeoxyribonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004536 deoxyribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004556 alpha-amylase activity IEP Neighborhood
MF GO:0004834 tryptophan synthase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005290 L-histidine transmembrane transporter activity IEP Neighborhood
MF GO:0005351 carbohydrate:proton symporter activity IEP Neighborhood
MF GO:0005402 carbohydrate:cation symporter activity IEP Neighborhood
MF GO:0005476 carnitine:acyl carnitine antiporter activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
CC GO:0005811 lipid droplet IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006308 DNA catabolic process IEP Neighborhood
BP GO:0006560 proline metabolic process IEP Neighborhood
BP GO:0006561 proline biosynthetic process IEP Neighborhood
BP GO:0006714 sesquiterpenoid metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006787 porphyrin-containing compound catabolic process IEP Neighborhood
BP GO:0006857 oligopeptide transport IEP Neighborhood
BP GO:0006970 response to osmotic stress IEP Neighborhood
BP GO:0006972 hyperosmotic response IEP Neighborhood
MF GO:0008106 alcohol dehydrogenase (NADP+) activity IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009266 response to temperature stimulus IEP Neighborhood
BP GO:0009409 response to cold IEP Neighborhood
BP GO:0009414 response to water deprivation IEP Neighborhood
BP GO:0009415 response to water IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009607 response to biotic stimulus IEP Neighborhood
BP GO:0009611 response to wounding IEP Neighborhood
BP GO:0009620 response to fungus IEP Neighborhood
BP GO:0009624 response to nematode IEP Neighborhood
BP GO:0009651 response to salt stress IEP Neighborhood
BP GO:0009694 jasmonic acid metabolic process IEP Neighborhood
CC GO:0009705 plant-type vacuole membrane IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009737 response to abscisic acid IEP Neighborhood
BP GO:0009738 abscisic acid-activated signaling pathway IEP Neighborhood
BP GO:0009739 response to gibberellin IEP Neighborhood
BP GO:0009753 response to jasmonic acid IEP Neighborhood
BP GO:0009813 flavonoid biosynthetic process IEP Neighborhood
MF GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity IEP Neighborhood
BP GO:0009830 cell wall modification involved in abscission IEP Neighborhood
BP GO:0009970 cellular response to sulfate starvation IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010035 response to inorganic substance IEP Neighborhood
BP GO:0010047 fruit dehiscence IEP Neighborhood
BP GO:0010118 stomatal movement IEP Neighborhood
MF GO:0010178 IAA-amino acid conjugate hydrolase activity IEP Neighborhood
MF GO:0010210 IAA-Phe conjugate hydrolase activity IEP Neighborhood
MF GO:0010211 IAA-Leu conjugate hydrolase activity IEP Neighborhood
BP GO:0010256 endomembrane system organization IEP Neighborhood
BP GO:0010260 animal organ senescence IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0010334 sesquiterpene synthase activity IEP Neighborhood
MF GO:0010436 carotenoid dioxygenase activity IEP Neighborhood
BP GO:0010439 regulation of glucosinolate biosynthetic process IEP Neighborhood
CC GO:0012511 monolayer-surrounded lipid storage body IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015144 carbohydrate transmembrane transporter activity IEP Neighborhood
MF GO:0015145 monosaccharide transmembrane transporter activity IEP Neighborhood
MF GO:0015173 aromatic amino acid transmembrane transporter activity IEP Neighborhood
MF GO:0015174 basic amino acid transmembrane transporter activity IEP Neighborhood
MF GO:0015179 L-amino acid transmembrane transporter activity IEP Neighborhood
MF GO:0015181 arginine transmembrane transporter activity IEP Neighborhood
MF GO:0015189 L-lysine transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015293 symporter activity IEP Neighborhood
MF GO:0015294 solute:cation symporter activity IEP Neighborhood
MF GO:0015295 solute:proton symporter activity IEP Neighborhood
BP GO:0015749 monosaccharide transmembrane transport IEP Neighborhood
BP GO:0015994 chlorophyll metabolic process IEP Neighborhood
BP GO:0015996 chlorophyll catabolic process IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
BP GO:0016106 sesquiterpenoid biosynthetic process IEP Neighborhood
BP GO:0016143 S-glycoside metabolic process IEP Neighborhood
BP GO:0016145 S-glycoside catabolic process IEP Neighborhood
MF GO:0016229 steroid dehydrogenase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016647 oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016815 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
BP GO:0017001 antibiotic catabolic process IEP Neighborhood
MF GO:0018822 nitrile hydratase activity IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0019757 glycosinolate metabolic process IEP Neighborhood
BP GO:0019759 glycosinolate catabolic process IEP Neighborhood
BP GO:0019760 glucosinolate metabolic process IEP Neighborhood
BP GO:0019762 glucosinolate catabolic process IEP Neighborhood
MF GO:0019825 oxygen binding IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0032787 monocarboxylic acid metabolic process IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033015 tetrapyrrole catabolic process IEP Neighborhood
BP GO:0033993 response to lipid IEP Neighborhood
BP GO:0034219 carbohydrate transmembrane transport IEP Neighborhood
MF GO:0034256 chlorophyll(ide) b reductase activity IEP Neighborhood
MF GO:0034768 (E)-beta-ocimene synthase activity IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042343 indole glucosinolate metabolic process IEP Neighborhood
BP GO:0042430 indole-containing compound metabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0042538 hyperosmotic salinity response IEP Neighborhood
BP GO:0042744 hydrogen peroxide catabolic process IEP Neighborhood
BP GO:0042759 long-chain fatty acid biosynthetic process IEP Neighborhood
BP GO:0043207 response to external biotic stimulus IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
MF GO:0043765 T/G mismatch-specific endonuclease activity IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
BP GO:0044277 cell wall disassembly IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
MF GO:0045549 9-cis-epoxycarotenoid dioxygenase activity IEP Neighborhood
BP GO:0045962 positive regulation of development, heterochronic IEP Neighborhood
BP GO:0046149 pigment catabolic process IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0046592 polyamine oxidase activity IEP Neighborhood
BP GO:0046688 response to copper ion IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
MF GO:0050551 myrcene synthase activity IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
BP GO:0050829 defense response to Gram-negative bacterium IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0050898 nitrile metabolic process IEP Neighborhood
BP GO:0051094 positive regulation of developmental process IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0051240 positive regulation of multicellular organismal process IEP Neighborhood
BP GO:0051704 multi-organism process IEP Neighborhood
BP GO:0051707 response to other organism IEP Neighborhood
MF GO:0052578 alpha-farnesene synthase activity IEP Neighborhood
MF GO:0070401 NADP+ binding IEP Neighborhood
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Neighborhood
BP GO:0080028 nitrile biosynthetic process IEP Neighborhood
MF GO:0080061 indole-3-acetonitrile nitrilase activity IEP Neighborhood
MF GO:0080109 indole-3-acetonitrile nitrile hydratase activity IEP Neighborhood
BP GO:0080187 floral organ senescence IEP Neighborhood
BP GO:0097305 response to alcohol IEP Neighborhood
BP GO:1900055 regulation of leaf senescence IEP Neighborhood
BP GO:1900057 positive regulation of leaf senescence IEP Neighborhood
BP GO:1900376 regulation of secondary metabolite biosynthetic process IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
MF GO:1901474 azole transmembrane transporter activity IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
BP GO:1902609 (R)-2-hydroxy-alpha-linolenic acid biosynthetic process IEP Neighborhood
BP GO:1905623 positive regulation of leaf development IEP Neighborhood
MF GO:1990137 plant seed peroxidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR007608 Senescence_reg_S40 23 105
No external refs found!