Pp3c15_19420V3.1

Description : nuclear RNA polymerase A1

Gene families : OG0006451 (Archaeplastida) Phylogenetic Tree(s): OG0006451_tree ,
OG_05_0004749 (LandPlants) Phylogenetic Tree(s): OG_05_0004749_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c15_19420V3.1
Cluster	HCCA: Cluster_401

Target	Alias	Description	ECC score	Gene Family Method
Pp3c14_4000V3.1	No alias	RNA polymerase II large subunit	0.01	Archaeplastida
Pp3c14_4010V3.1	No alias	RNA polymerase II large subunit	0.02	Archaeplastida
Pp3c19_15140V3.1	No alias	RNA polymerase II large subunit	0.01	Archaeplastida
Pp3c1_30040V3.1	No alias	RNA polymerase II large subunit	0.02	Archaeplastida
Pp3c22_9940V3.1	No alias	RNA polymerase II large subunit	0.04	Archaeplastida
Pp3c24_10300V3.1	No alias	RNA polymerase II large subunit	0.02	Archaeplastida
Pp3c4_24940V3.1	No alias	RNA polymerase II large subunit	0.01	Archaeplastida
Pp3c6_15700V3.1	No alias	nuclear RNA polymerase C1	0.02	Archaeplastida
Pp3c8_4620V3.1	No alias	RNA polymerase II large subunit	0.01	Archaeplastida
Pp3s67_110V3.1	No alias	RNA polymerase II large subunit	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007083	RNA_pol_Rpb1_4	486	574
IPR000722	RNA_pol_asu	273	343
IPR000722	RNA_pol_asu	237	272
IPR007066	RNA_pol_Rpb1_3	348	472

External Links

No external refs found!

Pp3c15_19420V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation