1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT4G19870

AT4G19870


Description : Galactose oxidase/kelch repeat superfamily protein


Gene families : OG0001235 (Archaeplastida) Phylogenetic Tree(s): OG0001235_tree ,
OG_05_0000768 (LandPlants) Phylogenetic Tree(s): OG_05_0000768_tree ,
OG_06_0000384 (SeedPlants) Phylogenetic Tree(s): OG_06_0000384_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G19870
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AT2G44630 No alias Galactose oxidase/kelch repeat superfamily protein 0.05 Archaeplastida
AT4G11745 No alias Galactose oxidase/kelch repeat superfamily protein 0.05 Archaeplastida
AT4G11750 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 Archaeplastida
AT4G39060 No alias BEST Arabidopsis thaliana protein match is: Galactose... 0.05 Archaeplastida
AT4G39750 No alias F-box family protein-related 0.04 Archaeplastida
AT5G02980 No alias Galactose oxidase/kelch repeat superfamily protein 0.04 Archaeplastida
AT5G03000 No alias Galactose oxidase/kelch repeat superfamily protein 0.05 Archaeplastida
AT5G51250 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000018 regulation of DNA recombination IEP Neighborhood
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
MF GO:0000217 DNA secondary structure binding IEP Neighborhood
CC GO:0000228 nuclear chromosome IEP Neighborhood
BP GO:0000373 Group II intron splicing IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
MF GO:0000400 four-way junction DNA binding IEP Neighborhood
BP GO:0000710 meiotic mismatch repair IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004004 ATP-dependent RNA helicase activity IEP Neighborhood
MF GO:0004300 enoyl-CoA hydratase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0004722 protein serine/threonine phosphatase activity IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006290 pyrimidine dimer repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008186 RNA-dependent ATPase activity IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0008419 RNA lariat debranching enzyme activity IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009648 photoperiodism IEP Neighborhood
BP GO:0009649 entrainment of circadian clock IEP Neighborhood
MF GO:0016289 CoA hydrolase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016790 thiolester hydrolase activity IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0032135 DNA insertion or deletion binding IEP Neighborhood
MF GO:0032137 guanine/thymine mispair binding IEP Neighborhood
MF GO:0032138 single base insertion or deletion binding IEP Neighborhood
CC GO:0032300 mismatch repair complex IEP Neighborhood
CC GO:0032301 MutSalpha complex IEP Neighborhood
BP GO:0043153 entrainment of circadian clock by photoperiod IEP Neighborhood
BP GO:0043570 maintenance of DNA repeat elements IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0045910 negative regulation of DNA recombination IEP Neighborhood
BP GO:0048573 photoperiodism, flowering IEP Neighborhood
BP GO:0051053 negative regulation of DNA metabolic process IEP Neighborhood
BP GO:0097031 obsolete mitochondrial respiratory chain complex I biogenesis IEP Neighborhood
BP GO:0097034 obsolete mitochondrial respiratory chain complex IV biogenesis IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
CC GO:1990391 DNA repair complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001810 F-box_dom 28 70
IPR006652 Kelch_1 139 178
IPR006652 Kelch_1 182 226
No external refs found!