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  5. Pp3c16_10400V3.1

Pp3c16_10400V3.1


Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein


Gene families : OG0002142 (Archaeplastida) Phylogenetic Tree(s): OG0002142_tree ,
OG_05_0001948 (LandPlants) Phylogenetic Tree(s): OG_05_0001948_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c16_10400V3.1
Cluster HCCA: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
AT1G77940 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.13 Archaeplastida
AT3G18740 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.23 Archaeplastida
Cpa|evm.model.tig00001164.6 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
Cre10.g420750 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.31 Archaeplastida
GSVIVT01022191001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 Archaeplastida
GSVIVT01032102001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
Gb_02409 No alias component RPL30 of LSU proteome component 0.19 Archaeplastida
Gb_13527 No alias component RPL30 of LSU proteome component 0.05 Archaeplastida
LOC_Os01g16890.1 No alias component RPL30 of LSU proteome component 0.23 Archaeplastida
LOC_Os01g59730.1 No alias component RPL30 of LSU proteome component 0.06 Archaeplastida
LOC_Os05g41110.1 No alias component RPL30 of LSU proteome component 0.07 Archaeplastida
MA_10431626g0010 No alias component RPL30 of LSU proteome component 0.03 Archaeplastida
MA_6354g0010 No alias component RPL30 of LSU proteome component 0.17 Archaeplastida
Mp7g01690.1 No alias component RPL30 of LSU proteome component 0.29 Archaeplastida
Pp3c12_9290V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.22 Archaeplastida
Pp3c25_9320V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.11 Archaeplastida
Smo19071 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.23 Archaeplastida
Solyc01g009100.4.1 No alias component RPL30 of LSU proteome component 0.19 Archaeplastida
Solyc04g072660.4.1 No alias component RPL30 of LSU proteome component 0.15 Archaeplastida
Solyc11g071490.2.1 No alias component RPL30 of LSU proteome component 0.15 Archaeplastida
Zm00001e013242_P001 No alias component RPL30 of LSU proteome component 0.02 Archaeplastida
Zm00001e025492_P001 No alias component RPL30 of LSU proteome component 0.13 Archaeplastida
Zm00001e031987_P001 No alias component RPL30 of LSU proteome component 0.22 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 13 105
No external refs found!