1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c16_16070V3.1

Pp3c16_16070V3.1


Description : 20S proteasome beta subunit PBB2


Gene families : OG0004382 (Archaeplastida) Phylogenetic Tree(s): OG0004382_tree ,
OG_05_0005872 (LandPlants) Phylogenetic Tree(s): OG_05_0005872_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c16_16070V3.1
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
Cre10.g424400 No alias Protein degradation.26S proteasome.20S core... 0.02 Archaeplastida
GSVIVT01000574001 No alias Protein degradation.26S proteasome.20S core... 0.04 Archaeplastida
LOC_Os05g09490.1 No alias component beta type-2 of 26S proteasome 0.03 Archaeplastida
Mp1g03530.1 No alias component beta type-2 of 26S proteasome 0.05 Archaeplastida
Solyc04g024420.3.1 No alias component beta type-2 of 26S proteasome 0.04 Archaeplastida
Zm00001e033186_P001 No alias component beta type-2 of 26S proteasome 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0097526 spliceosomal tri-snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!