1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c16_17550V3.1

Pp3c16_17550V3.1


Description : Integrase-type DNA-binding superfamily protein


Gene families : OG0000003 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000001 (LandPlants) Phylogenetic Tree(s): OG_05_0000001_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c16_17550V3.1
Cluster HCCA: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00088760 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 Archaeplastida
AT1G75490 No alias Integrase-type DNA-binding superfamily protein 0.03 Archaeplastida
AT2G47520 HRE2 Integrase-type DNA-binding superfamily protein 0.03 Archaeplastida
AT3G25890 No alias Integrase-type DNA-binding superfamily protein 0.02 Archaeplastida
GSVIVT01009801001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.05 Archaeplastida
Gb_08781 No alias transcription factor (DREB) 0.02 Archaeplastida
Gb_25978 No alias Ethylene-responsive transcription factor ABI4... 0.02 Archaeplastida
LOC_Os06g07030.1 No alias transcription factor (DREB) 0.04 Archaeplastida
LOC_Os08g45110.1 No alias transcription factor (DREB) 0.04 Archaeplastida
MA_162045g0010 No alias transcription factor (DREB) 0.02 Archaeplastida
MA_16778g0010 No alias transcription factor (DREB) 0.02 Archaeplastida
MA_425410g0010 No alias Ethylene-responsive transcription factor RAP2-13... 0.02 Archaeplastida
MA_502153g0010 No alias transcription factor (ERF) 0.02 Archaeplastida
MA_9812198g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Smo38500 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 Archaeplastida
Solyc01g090560.4.1 No alias transcription factor (DREB) 0.02 Archaeplastida
Solyc02g090790.1.1 No alias transcription factor (ERF) 0.04 Archaeplastida
Solyc03g123500.4.1 No alias transcription factor (ERF) 0.02 Archaeplastida
Solyc04g050750.2.1 No alias transcription factor (DREB) 0.05 Archaeplastida
Zm00001e007351_P001 No alias transcription factor (ERF) 0.03 Archaeplastida
Zm00001e020274_P001 No alias transcription factor (ERF) 0.02 Archaeplastida
Zm00001e023759_P001 No alias Ethylene-responsive transcription factor ERF017... 0.02 Archaeplastida
Zm00001e023804_P001 No alias Ethylene-responsive transcription factor ERF013... 0.02 Archaeplastida
Zm00001e031497_P001 No alias Ethylene-responsive transcription factor ABI4 OS=Oryza... 0.02 Archaeplastida
Zm00001e036401_P001 No alias transcription factor (DREB) 0.02 Archaeplastida
Zm00001e039555_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004555 alpha,alpha-trehalase activity IEP Neighborhood
BP GO:0005984 disaccharide metabolic process IEP Neighborhood
BP GO:0005991 trehalose metabolic process IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009311 oligosaccharide metabolic process IEP Neighborhood
MF GO:0015927 trehalase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!