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  5. Pp3c16_2030V3.1

Pp3c16_2030V3.1


Description : histone mono-ubiquitination 1


Gene families : OG0001773 (Archaeplastida) Phylogenetic Tree(s): OG0001773_tree ,
OG_05_0002127 (LandPlants) Phylogenetic Tree(s): OG_05_0002127_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c16_2030V3.1
Cluster HCCA: Cluster_274

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00181670 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa... 0.02 Archaeplastida
AMTR_s00111p00036140 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AT1G55250 HUB2 histone mono-ubiquitination 2 0.04 Archaeplastida
AT2G44950 RDO4, HUB1 histone mono-ubiquitination 1 0.03 Archaeplastida
Cpa|evm.model.tig00000169.18 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01018223001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.07 Archaeplastida
GSVIVT01025404001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Gb_15023 No alias RING-HC-class E3 ligase 0.03 Archaeplastida
Gb_28646 No alias RING-HC-class E3 ligase 0.02 Archaeplastida
MA_10425980g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10430809g0020 No alias RING-HC-class E3 ligase 0.04 Archaeplastida
MA_10433679g0010 No alias RING-HC-class E3 ligase 0.05 Archaeplastida
MA_592562g0010 No alias RING-HC-class E3 ligase 0.03 Archaeplastida
Mp6g03540.1 No alias RING-HC-class E3 ligase 0.07 Archaeplastida
Smo175555 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
Zm00001e030249_P002 No alias RING-HC-class E3 ligase 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!