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  5. AT4G20740

AT4G20740


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG0005947 (Archaeplastida) Phylogenetic Tree(s): OG0005947_tree ,
OG_05_0008562 (LandPlants) Phylogenetic Tree(s): OG_05_0008562_tree ,
OG_06_0007299 (SeedPlants) Phylogenetic Tree(s): OG_06_0007299_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G20740
Cluster HCCA: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01000864001 No alias Pentatricopeptide repeat-containing protein At4g20740... 0.1 Archaeplastida
LOC_Os06g13950.1 No alias Pentatricopeptide repeat-containing protein At3g61520,... 0.07 Archaeplastida
LOC_Os07g08180.2 No alias Pentatricopeptide repeat-containing protein At4g20740... 0.07 Archaeplastida
Smo121399 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc01g068180.3.1 No alias Pentatricopeptide repeat-containing protein At4g20740... 0.04 Archaeplastida
Zm00001e030912_P001 No alias Pentatricopeptide repeat-containing protein At3g61520,... 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000741 karyogamy IEP Neighborhood
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0004084 branched-chain-amino-acid transaminase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004821 histidine-tRNA ligase activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006427 histidyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
CC GO:0009527 plastid outer membrane IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
CC GO:0009707 chloroplast outer membrane IEP Neighborhood
BP GO:0010197 polar nucleus fusion IEP Neighborhood
BP GO:0010928 regulation of auxin mediated signaling pathway IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0022904 respiratory electron transport chain IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
BP GO:0031538 negative regulation of anthocyanin metabolic process IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0031969 chloroplast membrane IEP Neighborhood
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
CC GO:0035097 histone methyltransferase complex IEP Neighborhood
BP GO:0035265 organ growth IEP Neighborhood
BP GO:0035510 DNA dealkylation IEP Neighborhood
CC GO:0042170 plastid membrane IEP Neighborhood
BP GO:0042773 ATP synthesis coupled electron transport IEP Neighborhood
BP GO:0042775 mitochondrial ATP synthesis coupled electron transport IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0045036 protein targeting to chloroplast IEP Neighborhood
CC GO:0048188 Set1C/COMPASS complex IEP Neighborhood
BP GO:0048284 organelle fusion IEP Neighborhood
BP GO:0048530 fruit morphogenesis IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0070988 demethylation IEP Neighborhood
BP GO:0071215 cellular response to abscisic acid stimulus IEP Neighborhood
BP GO:0071396 cellular response to lipid IEP Neighborhood
BP GO:0072596 establishment of protein localization to chloroplast IEP Neighborhood
BP GO:0072598 protein localization to chloroplast IEP Neighborhood
BP GO:0080111 DNA demethylation IEP Neighborhood
BP GO:0080156 mitochondrial mRNA modification IEP Neighborhood
BP GO:0080178 5-carbamoylmethyl uridine residue modification IEP Neighborhood
BP GO:0097306 cellular response to alcohol IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1900864 mitochondrial RNA modification IEP Neighborhood
BP GO:2000024 regulation of leaf development IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 506 551
IPR002885 Pentatricopeptide_repeat 296 345
IPR002885 Pentatricopeptide_repeat 226 275
IPR002885 Pentatricopeptide_repeat 634 679
IPR002885 Pentatricopeptide_repeat 402 426
IPR002885 Pentatricopeptide_repeat 370 398
No external refs found!