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  5. AT4G20820

AT4G20820


Description : FAD-binding Berberine family protein


Gene families : OG0000172 (Archaeplastida) Phylogenetic Tree(s): OG0000172_tree ,
OG_05_0000076 (LandPlants) Phylogenetic Tree(s): OG_05_0000076_tree ,
OG_06_0000069 (SeedPlants) Phylogenetic Tree(s): OG_06_0000069_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G20820
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00124850 evm_27.TU.AmTr_v1... Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 Archaeplastida
AMTR_s00032p00227420 evm_27.TU.AmTr_v1... Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.02 Archaeplastida
AMTR_s00038p00162870 evm_27.TU.AmTr_v1... Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.02 Archaeplastida
AT1G26400 No alias FAD-binding Berberine family protein 0.05 Archaeplastida
AT1G30700 No alias FAD-binding Berberine family protein 0.04 Archaeplastida
AT2G34810 No alias FAD-binding Berberine family protein 0.03 Archaeplastida
AT5G44410 No alias FAD-binding Berberine family protein 0.05 Archaeplastida
AT5G44440 No alias FAD-binding Berberine family protein 0.04 Archaeplastida
GSVIVT01015790001 No alias Berberine bridge enzyme-like 21 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os08g06170.1 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 Archaeplastida
Solyc02g070130.1.1 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.04 Archaeplastida
Solyc02g079480.1.1 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity ISS Interproscan
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004031 aldehyde oxidase activity IEP Neighborhood
MF GO:0005451 monovalent cation:proton antiporter activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006714 sesquiterpenoid metabolic process IEP Neighborhood
BP GO:0006814 sodium ion transport IEP Neighborhood
BP GO:0006885 regulation of pH IEP Neighborhood
BP GO:0008284 positive regulation of cell proliferation IEP Neighborhood
BP GO:0009687 abscisic acid metabolic process IEP Neighborhood
BP GO:0009688 abscisic acid biosynthetic process IEP Neighborhood
BP GO:0009740 gibberellic acid mediated signaling pathway IEP Neighborhood
BP GO:0010017 red or far-red light signaling pathway IEP Neighborhood
BP GO:0010043 response to zinc ion IEP Neighborhood
BP GO:0010074 maintenance of meristem identity IEP Neighborhood
BP GO:0010099 regulation of photomorphogenesis IEP Neighborhood
BP GO:0010286 heat acclimation IEP Neighborhood
BP GO:0010476 gibberellin mediated signaling pathway IEP Neighborhood
MF GO:0015081 sodium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0015385 sodium:proton antiporter activity IEP Neighborhood
MF GO:0015491 cation:cation antiporter activity IEP Neighborhood
BP GO:0016106 sesquiterpenoid biosynthetic process IEP Neighborhood
BP GO:0016145 S-glycoside catabolic process IEP Neighborhood
MF GO:0016623 oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
BP GO:0019722 calcium-mediated signaling IEP Neighborhood
BP GO:0019759 glycosinolate catabolic process IEP Neighborhood
BP GO:0019762 glucosinolate catabolic process IEP Neighborhood
BP GO:0019827 stem cell population maintenance IEP Neighborhood
BP GO:0019932 second-messenger-mediated signaling IEP Neighborhood
BP GO:0031537 regulation of anthocyanin metabolic process IEP Neighborhood
BP GO:0031539 positive regulation of anthocyanin metabolic process IEP Neighborhood
BP GO:0035725 sodium ion transmembrane transport IEP Neighborhood
BP GO:0042752 regulation of circadian rhythm IEP Neighborhood
BP GO:0042753 positive regulation of circadian rhythm IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043288 apocarotenoid metabolic process IEP Neighborhood
BP GO:0043289 apocarotenoid biosynthetic process IEP Neighborhood
BP GO:0044273 sulfur compound catabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0050898 nitrile metabolic process IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0055067 monovalent inorganic cation homeostasis IEP Neighborhood
BP GO:0071478 cellular response to radiation IEP Neighborhood
BP GO:0071482 cellular response to light stimulus IEP Neighborhood
BP GO:0071489 cellular response to red or far red light IEP Neighborhood
BP GO:0080027 response to herbivore IEP Neighborhood
BP GO:0080028 nitrile biosynthetic process IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
BP GO:0098727 maintenance of cell number IEP Neighborhood
MF GO:0099516 ion antiporter activity IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901658 glycosyl compound catabolic process IEP Neighborhood
BP GO:1902644 tertiary alcohol metabolic process IEP Neighborhood
BP GO:1902645 tertiary alcohol biosynthetic process IEP Neighborhood
BP GO:2000030 regulation of response to red or far red light IEP Neighborhood
InterPro domains Description Start Stop
IPR006094 Oxid_FAD_bind_N 86 221
IPR012951 BBE 466 524
No external refs found!