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  5. Pp3c16_360V3.1

Pp3c16_360V3.1


Description : global transcription factor group A2


Gene families : OG0001535 (Archaeplastida) Phylogenetic Tree(s): OG0001535_tree ,
OG_05_0002332 (LandPlants) Phylogenetic Tree(s): OG_05_0002332_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c16_360V3.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00250180 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
AT5G04290 SPT5L, KTF1 kow domain-containing transcription factor 1 0.03 Archaeplastida
GSVIVT01010022001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
GSVIVT01016203001 No alias Chromatin organisation.DNA methylation.canonical... 0.04 Archaeplastida
Gb_37075 No alias RNA polymerase-V auxiliary factor (KTF1/SPT5L).... 0.02 Archaeplastida
LOC_Os06g10620.1 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.05 Archaeplastida
MA_10434986g0010 No alias RNA polymerase-V auxiliary factor (KTF1/SPT5L).... 0.03 Archaeplastida
Smo449156 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Smo96727 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Solyc04g064700.4.1 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.02 Archaeplastida
Zm00001e030789_P001 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!