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  5. Pp3c16_3920V3.1

Pp3c16_3920V3.1


Description : related to ubiquitin 1


Gene families : OG0000077 (Archaeplastida) Phylogenetic Tree(s): OG0000077_tree ,
OG_05_0000113 (LandPlants) Phylogenetic Tree(s): OG_05_0000113_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c16_3920V3.1
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00104050 evm_27.TU.AmTr_v1... Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris 0.02 Archaeplastida
AMTR_s00095p00146440 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
GSVIVT01001971001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Gb_01257 No alias component RPL40 of LSU proteome component 0.06 Archaeplastida
Gb_15027 No alias component RPS27a of SSU proteome 0.02 Archaeplastida
Gb_28672 No alias ubiquitin-fold protein (RUB) 0.04 Archaeplastida
Gb_30150 No alias ubiquitin-fold protein (RUB) 0.02 Archaeplastida
Mp8g11720.1 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis... 0.03 Archaeplastida
Solyc01g068045.1.1 No alias component RPS27a of SSU proteome 0.02 Archaeplastida
Solyc08g083120.3.1 No alias component RPL40 of LSU proteome component 0.02 Archaeplastida
Zm00001e000962_P001 No alias component RPL40 of LSU proteome component 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!