Pp3c16_5160V3.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0031857 (LandPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c16_5160V3.1
Cluster HCCA: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00160280 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.03 Archaeplastida
AMTR_s00008p00232800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.03 Archaeplastida
AT1G03510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT1G22830 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT1G50270 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
GSVIVT01037390001 No alias Pentatricopeptide repeat-containing protein At4g14170... 0.04 Archaeplastida
Gb_07442 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Gb_12573 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_25869 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.02 Archaeplastida
Gb_38938 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
LOC_Os01g68490.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os03g60690.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 Archaeplastida
LOC_Os05g33920.1 No alias Pentatricopeptide repeat-containing protein At4g14170... 0.02 Archaeplastida
Smo104851 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Solyc02g079380.2.1 No alias RNA editing factor (CRR22) 0.02 Archaeplastida
Solyc02g084830.4.1 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.03 Archaeplastida
Solyc03g116840.3.1 No alias RNA editing factor (OTP81) 0.04 Archaeplastida
Solyc04g082870.1.1 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 Archaeplastida
Solyc07g005850.3.1 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.02 Archaeplastida
Zm00001e014825_P001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Zm00001e029819_P003 No alias RNA editing factor (CRR22) 0.02 Archaeplastida
Zm00001e039305_P001 No alias RNA editing factor (MEF13) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!