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  5. AT4G21705

AT4G21705


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0000235 (Archaeplastida) Phylogenetic Tree(s): OG0000235_tree ,
OG_05_0000298 (LandPlants) Phylogenetic Tree(s): OG_05_0000298_tree ,
OG_06_0003159 (SeedPlants) Phylogenetic Tree(s): OG_06_0003159_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G21705
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AT3G15590 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01020533001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.04 Archaeplastida
Gb_09452 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
LOC_Os02g55310.1 No alias Pentatricopeptide repeat-containing protein At5g27460... 0.02 Archaeplastida
LOC_Os07g40750.1 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.02 Archaeplastida
MA_100637g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 Archaeplastida
MA_29755g0010 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.03 Archaeplastida
MA_492314g0010 No alias RNA editing factor (POCO) 0.03 Archaeplastida
MA_94340g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
Solyc07g054090.3.1 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.05 Archaeplastida
Zm00001e012594_P001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000811 GINS complex IEP Neighborhood
MF GO:0004396 hexokinase activity IEP Neighborhood
MF GO:0004791 thioredoxin-disulfide reductase activity IEP Neighborhood
MF GO:0005092 GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005093 Rab GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006808 regulation of nitrogen utilization IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0008156 negative regulation of DNA replication IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008901 ferredoxin hydrogenase activity IEP Neighborhood
BP GO:0009432 SOS response IEP Neighborhood
BP GO:0009960 endosperm development IEP Neighborhood
BP GO:0010082 regulation of root meristem growth IEP Neighborhood
BP GO:0010212 response to ionizing radiation IEP Neighborhood
BP GO:0010225 response to UV-C IEP Neighborhood
BP GO:0010948 negative regulation of cell cycle process IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
BP GO:0015858 nucleoside transport IEP Neighborhood
BP GO:0015864 pyrimidine nucleoside transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor IEP Neighborhood
MF GO:0016695 oxidoreductase activity, acting on hydrogen as donor IEP Neighborhood
MF GO:0016699 oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
BP GO:0016925 protein sumoylation IEP Neighborhood
MF GO:0017137 Rab GTPase binding IEP Neighborhood
MF GO:0019789 SUMO transferase activity IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
CC GO:0031261 DNA replication preinitiation complex IEP Neighborhood
CC GO:0031300 intrinsic component of organelle membrane IEP Neighborhood
CC GO:0031301 integral component of organelle membrane IEP Neighborhood
CC GO:0031306 intrinsic component of mitochondrial outer membrane IEP Neighborhood
CC GO:0031307 integral component of mitochondrial outer membrane IEP Neighborhood
BP GO:0031401 positive regulation of protein modification process IEP Neighborhood
BP GO:0031647 regulation of protein stability IEP Neighborhood
CC GO:0032592 integral component of mitochondrial membrane IEP Neighborhood
BP GO:0032876 negative regulation of DNA endoreduplication IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0042964 thioredoxin reduction IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
BP GO:0045931 positive regulation of mitotic cell cycle IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
MF GO:0050566 asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity IEP Neighborhood
BP GO:0050821 protein stabilization IEP Neighborhood
BP GO:0051053 negative regulation of DNA metabolic process IEP Neighborhood
MF GO:0051879 Hsp90 protein binding IEP Neighborhood
BP GO:0060250 germ-line stem-cell niche homeostasis IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
BP GO:0080036 regulation of cytokinin-activated signaling pathway IEP Neighborhood
BP GO:0080038 positive regulation of cytokinin-activated signaling pathway IEP Neighborhood
CC GO:0098573 intrinsic component of mitochondrial membrane IEP Neighborhood
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Neighborhood
BP GO:2000539 regulation of protein geranylgeranylation IEP Neighborhood
BP GO:2000541 positive regulation of protein geranylgeranylation IEP Neighborhood
BP GO:2001020 regulation of response to DNA damage stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 128 157
IPR002885 Pentatricopeptide_repeat 270 291
IPR002885 Pentatricopeptide_repeat 161 206
No external refs found!