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  5. Pp3c18_12120V3.1

Pp3c18_12120V3.1


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG0001318 (Archaeplastida) Phylogenetic Tree(s): OG0001318_tree ,
OG_05_0001428 (LandPlants) Phylogenetic Tree(s): OG_05_0001428_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c18_12120V3.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
Cre06.g274500 No alias RNA processing.RNA 3-end polyadenylation.poly(A) RNA... 0.03 Archaeplastida
Smo102545 No alias RNA processing.RNA 3-end polyadenylation.poly(A) RNA... 0.02 Archaeplastida
Zm00001e015900_P004 No alias poly(A) RNA polymerase regulatory protein 0.03 Archaeplastida
Zm00001e023844_P001 No alias poly(A) RNA polymerase regulatory protein 0.02 Archaeplastida
Zm00001e036139_P002 No alias poly(A) RNA polymerase regulatory protein 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005319 lipid transporter activity IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0120009 intermembrane lipid transfer IEP Neighborhood
MF GO:0120013 intermembrane lipid transfer activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!