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  5. Pp3c18_14790V3.1

Pp3c18_14790V3.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG0005003 (Archaeplastida) Phylogenetic Tree(s): OG0005003_tree ,
OG_05_0005462 (LandPlants) Phylogenetic Tree(s): OG_05_0005462_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c18_14790V3.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00239810 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
AMTR_s00024p00239940 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
AT2G40360 No alias Transducin/WD40 repeat-like superfamily protein 0.12 Archaeplastida
Cpa|evm.model.tig00000382.38 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
Cre10.g417950 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 Archaeplastida
GSVIVT01004116001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 Archaeplastida
Gb_11990 No alias Ribosome biogenesis protein BOP1 homolog OS=Oryza sativa... 0.01 Archaeplastida
LOC_Os07g25440.1 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.17 Archaeplastida
MA_10426057g0010 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.09 Archaeplastida
Mp2g26050.1 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.21 Archaeplastida
Smo165451 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
Smo269521 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
Solyc01g103720.4.1 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.14 Archaeplastida
Zm00001e017600_P002 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 689 721
IPR001680 WD40_repeat 738 777
IPR001680 WD40_repeat 438 474
IPR012953 BOP1_N_dom 179 435
No external refs found!