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  5. Pp3c18_19330V3.1

Pp3c18_19330V3.1


Description : winged-helix DNA-binding transcription factor family protein


Gene families : OG0000491 (Archaeplastida) Phylogenetic Tree(s): OG0000491_tree ,
OG_05_0000417 (LandPlants) Phylogenetic Tree(s): OG_05_0000417_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c18_19330V3.1
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AT1G06760 No alias winged-helix DNA-binding transcription factor family protein 0.04 Archaeplastida
AT2G30620 No alias winged-helix DNA-binding transcription factor family protein 0.03 Archaeplastida
Cpa|evm.model.tig00020780.71 No alias No description available 0.03 Archaeplastida
Cre13.g567450 No alias Chromatin organisation.histones.H1 linker histone 0.07 Archaeplastida
GSVIVT01028074001 No alias Chromatin organisation.histones.H1 linker histone 0.06 Archaeplastida
Gb_02738 No alias linker histone (H1) 0.04 Archaeplastida
Gb_03348 No alias linker histone (H1) 0.04 Archaeplastida
Gb_21889 No alias linker histone (H1) 0.02 Archaeplastida
LOC_Os04g18090.1 No alias linker histone (H1) 0.08 Archaeplastida
LOC_Os07g08710.1 No alias linker histone (H1) 0.06 Archaeplastida
MA_102457g0010 No alias linker histone (H1) 0.04 Archaeplastida
MA_10436125g0010 No alias linker histone (H1) 0.03 Archaeplastida
MA_500183g0010 No alias linker histone (H1) 0.05 Archaeplastida
MA_5293931g0010 No alias No annotation 0.04 Archaeplastida
MA_6021364g0010 No alias linker histone (H1) 0.05 Archaeplastida
MA_6251451g0010 No alias No annotation 0.05 Archaeplastida
Mp6g03150.1 No alias linker histone (H1) 0.03 Archaeplastida
Solyc02g084240.3.1 No alias linker histone (H1) 0.02 Archaeplastida
Solyc09g066100.3.1 No alias linker histone (H1) 0.06 Archaeplastida
Solyc09g083380.4.1 No alias linker histone (H1) 0.06 Archaeplastida
Zm00001e006018_P006 No alias linker histone (H1) 0.03 Archaeplastida
Zm00001e007189_P001 No alias linker histone (H1) 0.06 Archaeplastida
Zm00001e011857_P001 No alias linker histone (H1) 0.03 Archaeplastida
Zm00001e011859_P001 No alias linker histone (H1) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!