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  5. Pp3c18_20990V3.1

Pp3c18_20990V3.1


Description : small RNA degrading nuclease 3


Gene families : OG0004735 (Archaeplastida) Phylogenetic Tree(s): OG0004735_tree ,
OG_05_0004392 (LandPlants) Phylogenetic Tree(s): OG_05_0004392_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c18_20990V3.1
Cluster HCCA: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
AT5G05540 SDN2 small RNA degrading nuclease 2 0.04 Archaeplastida
Cre01.g036600 No alias Small RNA degrading nuclease 3 OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_02951 No alias Small RNA degrading nuclease 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_10428723g0020 No alias miRNA nuclease (SDN1) 0.02 Archaeplastida
Mp1g15620.1 No alias miRNA nuclease (SDN1) 0.03 Archaeplastida
Solyc10g084160.2.1 No alias miRNA nuclease (SDN1) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
InterPro domains Description Start Stop
IPR013520 Exonuclease_RNaseT/DNA_pol3 170 312
No external refs found!